After Brochu, 1997, 2000, 2007, Molnar, Worthy & Willis, 2002, and Shan, Wu, Cheng & Sato, 2009

Note:

There has been a controversy of the phylogenetic placing of the interesting Eocene to Pleistocene Australo-Pacific crocodile-group Mekosuchinae. Depending of the analysis, Mekosuchines have shifted from in-group Crocodylidae [Tomistoma + Crocodylus] (Brochu, 2000, 2007) to closest sister of them (Brochu, 1997, Molnar, Worthy & Willis, 2002) and back again.

<==o Crocodyloidea Cuvier, 1807 sensu Brochu, 1997 (true crocodiles and relatives; aitokrokotiiliensukuiset krokotiilit)
   |-- †Prodiplocynodon langi Mook, 1941
   |-- †“Asiatosuchus” germanicus Berg, 1966
   `--+--+-- †“Crocodylus” affinis [incl. Brachyuranochampsa zangerli; “Crocodylus” clavis]
      |  `--+-- †Asiatosuchus grangeri Mook, 1940
      |     `-- †Mekosuchinae Willis, Molnar & Scanlon, 1993
      |-- †“Crocodylus” depressifrons
      `--+-- Dormaal crocodyloid [cf. "Crocodylus" depressifrons]
         `--+-- †Brachyuranochampsa eversolei Zangerl, 1944
            |-- †“Crocodylus” acer
            `--+-- †Harpacochampsa camfieldensis
               `--o Crocodylidae Cuvier, 1807 sensu Brochu, 1997
                  |-- Crocodylinae Cuvier, 1807 (true crocodiles; aitokrokotiilit)
                  `--o Tomistominae Kälin, 1955 (false gravials; valegraviaalit)
                     |?- †Thecachampsa antiqua (Leidy, 1852) [taxonomic history]
                     |?- †Rhamphosuchus crassidens Falconer & Cautlay, 1840
                     |-- †Kentisuchus spenceri (Buckland, 1836) Mook, 1955 [Crocodylus spenceri Buckland, 1836]
                     `--+-- †Megadontosuchus arduini (de Zigno, 1880) Mook, 1955 [Crocodilus arduini de Zigno, 1880]
                        |?- †Dollosuchus dixoni (Owen, 1850) Swinton, 1937 [Gavialis dixoni Owen, 1850; Eosuchus dixoni (Owen) Kuhn, 1936] [nomen dubium (Brochu, 2007)]
                        `--+-- †Dollosuchoides densmorei Brochu, 2007
                           |-- †Gavialosuchus americanus (Sellards, 1915) sensu Auffenberg, 1954 [a synonym of Thecachampsa?]
                           `--+-- †“Tomistomacairense Müller, 1927
                              `--+--+-- †“Tomistoma” lusitanica (Vianna & Morales, 1945) sensu Antunes, 1961 [=? Thecachampsa antiqua (Leidy, 1852) Myrick, 2001]
                                 |  |-- Tomistoma schlegenii Müller, 1838 (false gravial; sundangraviaali, valegraviaali)
                                 |  `--o †Cavialosuchus
                                 |     |?- †C. carolinensis Erickson & Sawyer, 1966
                                 |     `-- †C. eggenburgensis 
                                 `--+-- †Paratomistoma courtii Brochu & Gingerich, 2000
                                    `--+-- †Toyotamaphimeia machikanensis (Kobatake, Chiji, Ikebe, Ishida, Kamei, Nakaseko & Matsumoto, 1965) Aoki, 1983 [Tomistoma machikanensis Kobatake, Chiji, Ikebe, Ishida, Kamei, Nakaseko & Matsumoto, 1965]
                                       `--+-- †Maomingosuchus petrolica (Yeh, 1958) Shan, Wu, Cheng & Sato, 2017 [Tomistoma petrolica Yeh, 1958]
                                          `-- †Penghusuchus pani Shan, Wu, Cheng & Sato, 2009; M.Mioc. EAs.

Crocodyloidea incertae sedis:

Asiatosuchus Mook, 1940
        †Asiatosuchus depressifrons [“Crocodylus” depressifrons]
        †Asiatosuchus haeckeliAsiatosuchus monsvialensisAsiatosuchus nanlingensis Young, 1964
        †Asiatosuchus volgensis Efimov & Yarkov, 1993
        †Asiatosuchus zajsanicusAigialosuchus villandensis Persson, 1960; L.Cret. NEu.
    †Brachyuranochampsa zangerli Mook, 1962
    †“Crocodylusicenicus
    †“Crocodylussaulii
    †“CrocodyluscantabrigensisLianghusuchus hengyangensis Young, 1948; L.Cret. EAs.
  TomistominaeCharactosuchus Eoc. Caribb.
        †C. fieldsi Langston, 1965
        †C. kugleri Berg, 1969
        †C. mendezi (Souza Filho & Bocquenti, 1989)
        †C. sansoai Souza Filho, 1991
    Tomistoma Müller, 1838 [Melitosaurus Owen 1850]
        †Tomistoma borisovi Efimov, 1988
        †Tomistoma calaritanum Capellini, 1890
        †Tomistoma champsoides Owen, 1850 [Melitosaurus champsoides (Owen, 1850) Owen, 1850?]
        †Tomistoma coppensi Pickford, 1994
        †Tomistoma dowsoni Fourtau, 1918
        †Tomistoma gaudense Hulke, 1871
        †Tomistoma kerunense Andrews, 1905
        †Tomistoma lyceense Costa, 1848
        †Tomistoma taiwanicus Shikama, 1972
        †Tomistoma tandoni Sahni & Mishra, 1975

reference(s):

After Lee & Yates, 2018

<==o Crocodyloidea
   |-- †Prodiplocynodon langi
   `--+-- †“Asiatosuchus” germanicus
      `--+-- †“Crocodylus” affinis
         `--+-- †“Crocodylus” depressifrons]
            `--+--+-- †“Crocodylus” acer
               |  `-- †Brachyuranochampsa eversolei
               `--+--+-- †Asiatosuchus clarkae
                  |  `-- †Mekosuchinae
                  `--o Longirostres
                     |--o Gavialoidea
                     |  |-- †Kentisuchus spenceri
                     |  `--+--+-- †Paratomistoma courtii
                     |     |  `-- †Maroccosuchus zennaroi
                     |     `--+-- †Dollosuchoides densmorei
                     |        `--+-- †“Tomistomacairense
                     |           `--o Gavialidae
                     |              |--+-- †“Tomistoma” lusitanica
                     |              |  `-- Tomistoma schlegenii
                     |              `--+--+--+-- †Cavialosuchus americanus
                     |                 |  |  `-- †Cavialosuchus eggenburgensis
                     |                 |  `--+-- †Penghusuchus pani
                     |                 |     `-- †Toyotamaphimeia machikanensis
                     |                 `--+-- †Harpacochampsa camfieldensis
                     |                    `--+--+-- †Piscogavialis jugaliperforatus
                     |                       |  `-- †Gryposuchus pachakamue
                     |                       `--+-- †Ikanogavialis gameroi
                     |                          `--+-- †Gryposuchus columbianus
                     |                             `--+-- †Gavialis browni
                     |                                `--+-- †Gavialis bengawanicus
                     |                                   `-- Gavialis gangeticus
                     `--+-- †“Crocodylusmegarhinus
                        `--o Crocodylidae sensu stricto
                           |--+--+-- Mecistops cataphractus
                           |  |  `--+-- †Euthecodon brumpti
                           |  |     `-- †Euthecodon arambourgii
                           |  `--+-- †Brochuchus pigotti
                           |     `--+-- †Rimasuchus lloidi
                           |        `--+-- †Voay robustus
                           |           `--+-- Osteolaemus tetraspis
                           |              `-- Osteolaemus osborni
                           `--+--+--+-- †Crocodylus. anthropophagus
                              |  |  `-- †Crocodylus thorbjarnarsoni
                              |  `--+-- †Crocodylus palaeindicus
                              |     `-- †Crocodylus sp. [<Tirani Desert>]
                              `--+--+--+-- Crocodylus johnstoni
                                 |  |  `--+-- Crocodylus novaeguineae
                                 |  |     `-- Crocodylus mindorensis
                                 |  `--+-- Crocodylus porosus
                                 |     `--+-- Crocodylus siamensis
                                 |        `-- Crocodylus palustris
                                 `--+--+-- †Crocodylus checchiai
                                    |  `-- †Crocodylus falconensis
                                    `--+-- Crocodylus suchus
                                       `--+-- Crocodylus niloticus
                                          `--+--+-- Crocodylus moreletii
                                             |  `-- Crocodylus rhombifer
                                             `--+-- Crocodylus intermedius
                                                `-- Crocodylus acutus

Reference(s):

  • Lee, M. S. Y. & Yates, A. M., 2018: Tip-dating and homoplasy: reconciling the shallow molecular divergences of modern gharials with their long fossil record.
    –Proceedings of the Royal Society B: Biological Sciences: Vol. 285, #1881, Art.nr. 20181071, pp. 1-10 [doi: 10.1098/rspb.2018.1071]

After Brochu, 2007

<==o Crocodyloidea
   |-- †Prodiplocynodon
   |-- †“Asiatosuchus” germanicus
   `--+-- Dormaal crocodyloid
      |-- †Asiatosuchus grangeri
      |-- †“Crocodylus” affinis
      `--+-- †Brachyuranochampsa
         |-- †“Crocodylus” acer
         `--o Crocodylidae
            |--+-- †“Crocodylusmegarhinus
            |  |-- †Mekosuchinae
            |  `--+-- Osteolaeminae
            |     `-- Crocodylinae
            `--o Tomistominae
               |-- †Kentisuchus
               `--+-- †Dollosuchoides Brochu, 2007
                  `--+-- †Gavialosuchus americanus
                     `--+-- †“Tomistomacairense
                        `--+-- †Paratomistoma
                           `--+-- †Cavialosuchus eggenburgensis
                              |-- †“Tomistomapetrolia
                              `-- Tomistoma schlegenii Müller, 1838 (false gravial; sundangraviaali, valegraviaali)


Reference(s):