After Rowe, 1988 and Luo, 1994

<==o Eucynodontia (advanced cynodonts and mammals)
   |--o †Cynognathus Seeley, 1895 [Cynidiognathus Haughton, 1922, Lycaenognathus, Lycochampsa, ?Karoomys] [Cynognathia: Cynognathidae]
   |  |?- †C. longiceps (Haughton, 1922) [Cynidiognathus longiceps]
   |  |?- †C. ferox [Lycochampsa ferox]
   |  `-- †C. crateronotus Seeley, 1895
   `--o Probainognathia Hopson, 1990
      |?- †Ecteninion lunensis Martinez, May & Forster, 1996
      |?- †Brasilitherium riograndensis Bonaparte, Martinelli, Schultz & Rubert, 2003
      |?- †Brasilodon quadrangularis Bonaparte, Martinelli, Schultz & Rubert, 2003
      |--o †Probainognathidae
      |  |?- †Lepagia gaumemsis Hahn, Lepage & Wouters, 1987
      |  `-- †Probainognathus jenseni
      `--o Mammaliamorpha Rowe, 1988
         |-- †Tritylodontoidea [Gomphodontia; Traversodontidae sensu Flynn et al., 1999]
         `--o Chiniquodontoidea Huene, 1936 [Tritheledontidae sensu Luo, 1994]
            |?- †Eoraetia
            |?- †Kunminia minima Young, 1947
            |?- †"Hahnia" obliqua Godefroit & Battail, 1997 [generic name preoccubied (Dykes, 2001)]
            |?- †Maubeugia lotharingica Godefroit & Battail, 1997
            `--+-- †Chiniquodontidae v. Huene, 1936 sensu Carroll, 1988 [incl. Dromatheriidae Gill, 1872 and Therioherpetidae Bonaparte & Barberena, 1975]
               `--+?- †Riograndia guaibaensis Bonaparte, Ferigolo & Ribeiro, 2001 [Riograndidae Bonaparte, Ferigolo & Ribeiro, 2001]
                  |--o †Tritheledontidae Broom, 1912 [incl. Ictidosauridae Young, 1947 and Diarthrognathidae Crompton, 1958]
                  |  |-- †Chalimia musteloides Bonaparte, 1978
                  |  |-- †Diarthrognathus broomi Crompton, 1958 [Diarthrognathidae Crompton, 1958]
                  |  |?- †Theioherpeton
                  |  |-- †Tritheledon riconoi Broom, 1912 [Trithelodon ]
                  |  `--o †Pachygenelus Watson, 1913 [?Pattsia Lees & Mills, 1983; Pachygenelius]
                  |     |-- †P. monus Watson, 1913 [?Pattsia likhoelensis Lees & Mills, 1983]
                  |     |-- †P. sp. cf. P. monus [=P. milleri Chatterjee, 1983??] [Shubin, Olsen & Sues, 1994] [McCoy Brook Formation, Canada, North America] 
                  |     `-- †P. broomi (Crompton, 1958) [Diarthrognathus broomi Crompton, 1958]
                  `-- Mammaliaformes Rowe, 1988 [Mammalia sensu Luo, 1994 [sensu lato]] 

Reference(s):

Special thanks to:

Jos H. M. Dols, for gathering additional information and species.