After Teeling, Springer, Madsen, Bates, O'Brien & Murphy, 2005, and Simmons, Seymour, Habersetzer & Gunnell, 2008

<==o Chiroptera Blumenbach, 1779 [paraphyletic Microchiroptera] (bats; lepakot)
   |?- †Ageina
   |?- †Chadronycteris
   |?- †Alastorius
   |-- †Onychonycteris finneyi Simmons, Seymour, Habersetzer & Gunnell, 2008; L.Eoc. WNAm. [Onychonycteridae Simmons, Seymour, Habersetzer & Gunnell, 2008]
   `--+--o †Archaeonycteridae [Icaronycteridae]
      |  |?- †Australonycteris clarkae Hand, Novacek, Godthelp & Archer, 1994; L. Eoc. Aust.
      |  |-- †Archaeonycteris trigonodon
      |  `-- †Icaronycteris index
      `--+-- †Hassianycteris Habersetzer & Storch, 1987 [Hassianycterididae]
         |-- †Tanzanycteris mannardi Gunnell, et al., 2003 [Tanzanycterididae Gunnell, et al., 2003]
         `--+--o †Palaeochiropterygidae
            |  |--o †Palaeochiropteryx
            |  |  |-- †P. spiegeli
            |  |  `-- †P. tupaiodon
            |  `--+-- †Matthesia Smith & Storch, 1981
            |     `-- †Cecilionycteris prisca Sigé & Russell, 1980
            `--+--o Yinochiroptera
               |  |-- Pteropodidae Gray, 1821 (mega bats; flying foxes; hedelmälepakot)
               |  `--+--o Rhinopomatoidea
               |     |  |-- Craseonycteris thonglongyai (siankuonolepakko) [Craseonycteridae]
               |     |  `--o Rhinopoma (hiirenhäntälepakot)? [Rhinopomatidae]
               |     |     |-- R. microphyllum (isohiirenhäntälepakko)
               |     |     |-- R. hardwickei (pikkuhiirenhäntälepakko)
               |     |     `-- R. muscatellum (small mouse-tailed bat)
               |     `--o Rhinolophoidea
               |        |-- Megadermatidae (valevampyyrit)
               |        `-- Rhinolophidae [incl. Hipposideridae] (hevosenkenkäyököt, kaviokuonoyököt)
               `--o Yangochiroptera
                  |--o Emballonuroidea
                  |  |-- Nycteridae (valkopäälepakot)
                  |  `-- Emballonuridae (hautalepakot)
                  `--+-- Vespertilionida [Vespertilionoidea sensu McKenna & Bell, 1997]
                     `--o Noctilionoidea [Phyllostomatoidea]
                        |-- Myzopoda aurita [Myzopodidae] (madagaskarinimujalkalepakko)
                        `--+--o Mystacinidae (lyhythäntälepakot)
                           |  |--o †Icarops Hand, Archer, Godthelp, Murray & Megirian, 1998
                           |  |  |-- †I. breviceps Hand, Archer, Godthelp, Murray & Megirian, 1998
                           |  |  |-- †I. aenae Hand, Archer, Godthelp, Murray & Megirian, 1998
                           |  |  `-- †I. paradox Hand, Archer, Godthelp, Murray & Megirian, 1998
                           |  `--o Mystacina (lyhythäntälepakot)
                           |     |-- M. tuberculata (lyhythäntälepakko)
                           |     `-- [†]M. robusta (isolyhythäntälepakko)
                           `--+--+-- Mormoopidae (lehtiposkilepakot)
                              |  `-- Phyllostomatidae Gray, 1825 [Phyllostomidae] [incl. Desmodontidae] (leikot, pitkäkielilepakot & verivampyyrit)
                              `--+--o Thyroptera [Thyropteridae] (imujalkalepakot)
                                 |  |-- T. discifera (hondurasinimujalkalepakko)
                                 |  `-- T. tricolor (spix's diskwinged bat)
                                 `--+--o Furipteridae (raivotarlepakot)
                                    |  |-- Furipterus horrens (raivotarlepakko)
                                    |  `-- Amorphochilus schnablii
                                    `--o Noctilio [Noctilionidae] (kalastajalepakot)
                                       |-- N. leporinus (kalastajalepakko)
                                       `-- N. albiventris [N. lapialis] (pikkubulldoggilepakko)

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