After Nelson, 1994, with Recent species from Froese & Pauly, 2001 [“The Fishbase”]

<==o Gobiinae [N: 130 genera]
   |-- Acentrogobius [21]
   |--o Amblygobius [13]
   |  |-- A. albimaculatus (Rüppell, 1830) (Butterfly goby)
   |  |-- A. buanensis Herre, 1927 (Buan goby)
   |  |-- A. bynoensis (Richardson, 1844)
   |  |-- A. decussatus (Bleeker, 1855) (Orange-striped goby)
   |  |-- A. hectori (Smith, 1957) (Hector's goby)
   |  |-- A. linki Herre, 1927
   |  |-- A. magnusi (Klausewitz, 1968)
   |  |-- A. nocturnus (Herre, 1945) (Nocturn goby)
   |  |-- A. phalaena (Valenciennes, 1837) (Banded goby)
   |  |-- A. rainfordi (Whitley, 1940) (Old glory)
   |  |-- A. semicinctus (Bennett, 1833)
   |  |-- A. sphynx (Valenciennes, 1837) (Sphinx goby)
   |  `-- A. tekomaji (Smith, 1959)
   |--  Aphia minuta (Risso, 1810) [Aphya] (kuultotokko; Transparent goby)
   |--o Asterropteryx [3]
   |  |-- A. ensiferus (Bleeker, 1874) (Miller's damsel)
   |  |-- A. semipunctatus Rüppell, 1830 (Starry goby)
   |  `-- A. spinosus (Goren, 1981)
   |--o Barbulifer [4]
   |  |-- B. antennatus Böhlke & Robins, 1968 Barbulifer
   |  |-- B. ceuthoecus (Jordan & Gilbert, 1884) Bearded goby
   |  |-- B. mexicanus Hoese & Larson, 1985
   |  `-- B. pantherinus (Pellegrin, 1901) Panther goby
   |-- Bathygobius [25]
   |--o Coryogalops [Monishia] [8]
   |  |-- C. adamsoni (Goren, 1985) (Adamson's goby)
   |  |-- C. anomolus Smith, 1958 (Anomolous goby)
   |  |-- C. bulejiensis (Hoda, 1983) (Thinbarred goby)
   |  |-- C. monospilus Randall, 1994 (Onespot goby)
   |  |-- C. ochetica (Norman, 1927)
   |  |-- C. sordida (Smith, 1959) (Epaulette goby)
   |  |-- C. tessellatus Randall, 1994
   |  `-- C. william (Smith, 1948) (Kaalpens goby)
   |--o Coryphopterus [16]
   |  |-- C. alloides Böhlke & Robins, 1960 (Barfin goby)
   |  |-- C. dicrus Böhlke & Robins, 1960 (Colon goby)
   |  |-- C. duospilus (Hoese & Reader, 1985) (Barenape goby)
   |  |-- C. eidolon Böhlke & Robins, 1960 (Pallid goby)
   |  |-- C. glaucofraenum Gill, 1863 (Bridled goby)
   |  |-- C. hyalinus Böhlke & Robins, 1962 (Glass goby)
   |  |-- C. inframaculatus Randall, 1994
   |  |-- C. lipernes Böhlke & Robins, 1962 (Peppermint goby)
   |  |-- C. longispinus (Goren, 1978) (Orange-spotted sand-goby)
   |  |-- C. neophytus (Günther, 1877) (Common fusegoby)
   |  |-- C. personatus (Jordan & Thompson, 1905) (Masked goby)
   |  |-- C. punctipectophorus Springer, 1960 (Spotted goby)
   |  |-- C. signipinnis (Hoese & Obika, 1988)
   |  |-- C. thrix Böhlke & Robins, 1960 (Bartail goby)
   |  |-- C. urospilus Ginsburg, 1938 (Redlight goby)
   |  `-- C. venezuelae Cervigón, 1966
   |?-o Crystallogobius []
   |  |?- C. nilssoni (lasitokko)
   |  `-- C. linearis (Düben, 1845) (Crystal goby)
   |--o Evermannichthys [3]
   |  |-- E. convictor Böhlke & Robins, 1969 (Tenant goby)
   |  |-- E. metzelaari Hubbs, 1923 (Sponge goby)
   |  `-- E. silus Böhlke & Robins, 1969 (Pugnose goby)
   |-- Eviota [37]
   |--o Gobiopsis Eoc. WAs. R. Oc. [8]
   |  |-- G. aporia Lachner & McKinney, 1978
   |  |-- G. arenaria (Snyder, 1908)
   |  |-- G. atrata (Griffin, 1933) (New Zealand black goby)
   |  |-- G. bravoi (Herre, 1940) (Bravo's bearded goby)
   |  |-- G. canalis Lachner & McKinney, 1978 (Checkered goby)
   |  |-- G. macrostoma Steindachner, 1860 (Longjaw goby)
   |  |-- G. pinto (Smith, 1947) (Snakehead goby)
   |  `-- G. quinquecincta (Smith, 1931)
   |-- Gobiosoma [30]
   |-- Gobius ?M. Eoc. Plioc. Eu. Mioc. NA. WAs. Plioc. NAf. R. Oc. [22]
   |--o Gobulus [3]
   |  |-- G. crescentalis (Gilbert, 1892)
   |  |-- G. hancocki Ginsburg, 1938 (Sandtop goby)
   |  `-- G. myersi Ginsburg, 1939 (Paleback goby)
   |--o Hetereleotris [12]
   |  |-- H. apora (Hoese & Winterbottom, 1979) (Poreless goby)
   |  |-- H. bipunctata Tortonese, 1976
   |  |-- H. caminata (Smith, 1958) (Mourner)
   |  |-- H. diademata (Rüppell, 1830)
   |  |-- H. kenyae Smith, 1958
   |  |-- H. margaretae Hoese, 1986 (Smooth-scale goby)
   |  |-- H. poecila (Fowler, 1946)
   |  |-- H. tentaculata (Smith, 1958) (Locusthead)
   |  |-- H. vinsoni Hoese, 1986 (Vinson's goby)
   |  |-- H. vulgare (Klunzinger, 1871) (Common goby)
   |  |-- H. zanzibarensis (Smith, 1958) (Goggle goby)
   |  `-- H. zonata (Fowler, 1934) (Goggles)
   |--o Istigobius [11]
   |  |-- I. campbelli (Jordan & Snyder, 1901)
   |  |-- I. decoratus (Herre, 1927) (Decorated goby)
   |  |-- I. diadema (Steindachner, 1876)
   |  |-- I. goldmanni (Bleeker, 1852)
   |  |-- I. hoesei Murdy & McEachran, 1982
   |  |-- I. hoshinonis (Tanaka, 1917)
   |  |-- I. nigroocellatus (Günther, 1873) (Black-spotted goby)
   |  |-- I. ornatus (Rüppell, 1830) (Ornate goby)
   |  |-- I. perspicillatus (Herre, 1945)
   |  |-- I. rigilius (Herre, 1953) (Rigilius goby)
   |  `-- I. spence (Smith, 1947) (Pearl goby)
   |--o Lophogobius [3]
   |  |-- L. bleekeri Popta, 1921
   |  |-- L. cristulatus Ginsburg, 1939
   |  `-- L. cyprinoides (Pallas, 1770) (Crested goby)
   |--o Lythrypnus [19]
   |  |-- L. alphigena Bussing, 1990
   |  |-- L. cobalus Bussing, 1990
   |  |-- L. crocodilus (Beebe & Tee-Van, 1928) (Mahogany goby)
   |  |-- L. dalli (Gilbert, 1890) (Bluebanded goby)
   |  |-- L. elasson Böhlke & Robins, 1960 (Dwarf goby)
   |  |-- L. gilberti (Heller & Snodgrass, 1903) (Galapagos blue-banded goby)
   |  |-- L. heterochroma Ginsburg, 1939 (Diphasic goby)
   |  |-- L. insularis Bussing, 1990
   |  |-- L. lavenbergi Bussing, 1990
   |  |-- L. minimus Garzón & Acero P., 1988 (Pygmy goby)
   |  |-- L. mowbrayi (Bean, 1906)
   |  |-- L. nesiotes Böhlke & Robins, 1960 (Island goby)
   |  |-- L. okapia Robins & Böhlke, 1964 (Okapi goby)
   |  |-- L. phorellus Böhlke & Robins, 1960 (Convict goby)
   |  |-- L. pulchellus Ginsburg, 1938 (Gorgeous goby)
   |  |-- L. rhizophora (Heller & Snodgrass, 1903) (Spotcheek goby)
   |  |-- L. solanensis Acero, 1981
   |  |-- L. spilus Böhlke & Robins, 1960 (Bluegold goby)
   |  `-- L. zebra (Gilbert, 1890) (Zebra goby)
   |--o Microgobius -group
   |  |--o Bollmannia [11]
   |  |  |-- B. boqueronensis Evermann & Marsh, 1899 (White-eye goby)
   |  |  |-- B. chlamydes Jordan, 1890
   |  |  |-- B. communis Ginsburg, 1942 (Ragged goby)
   |  |  |-- B. gomezi Acero, 1981 (Colombian goby)
   |  |  |-- B. longipinnis Ginsburg, 1939
   |  |  |-- B. macropoma Gilbert, 1892
   |  |  |-- B. marginalis Ginsburg, 1939
   |  |  |-- B. ocellata Gilbert, 1892
   |  |  |-- B. pawneea Ginsburg, 1939
   |  |  |-- B. stigmatura Gilbert, 1892
   |  |  `-- B. umbrosa Ginsburg, 1939
   |  |--o Microgobius [14]
   |  |  |-- M. brevispinis Ginsburg, 1939
   |  |  |-- M. carri Fowler, 1945 (Seminole goby)
   |  |  |-- M. crocatus Birdsong, 1968
   |  |  |-- M. curtus Ginsburg, 1939
   |  |  |-- M. cyclolepis Gilbert, 1890 (Roundscale goby)
   |  |  |-- M. emblematicus (Jordan & Gilbert, 1882) (Emblem goby)
   |  |  |-- M. erectus Ginsburg, 1938 (Erect goby)
   |  |  |-- M. gulosus (Girard, 1858) (Clown goby)
   |  |  |-- M. meeki Evermann & Marsh, 1899
   |  |  |-- M. microlepis Longley & Hildebrand, 1940 (Banner goby)
   |  |  |-- M. miraflorensis Gilbert & Starks, 1904 (Miraflores goby)
   |  |  |-- M. signatus Poey, 1876
   |  |  |-- M. tabogensis Meek & Hildebrand, 1928
   |  |  `-- M. thalassinus (Jordan & Gilbert, 1883) (Green goby)
   |  |--o Palatogobius Gilbert, 1971
   |  |  |-- P. grandoculusGreenfield, 2002:
   |  |  `-- P. paradoxus Gilbert, 1971 (Mauve goby)
   |  `--o Parrella [5]
   |     |-- P. fusca Ginsburg, 1939
   |     |-- P. ginsburgi Wade, 1946
   |     |-- P. lucretiae (Eigenmann & Eigenmann, 1888) (Lucretia's goby)
   |     |-- P. macropteryx Ginsburg, 1939
   |     `-- P. maxillaris Ginsburg, 1938 (Doublestripe goby)
   |--o Nematogobius [3]
   |  |-- N. ansorgii Boulenger, 1910
   |  |-- N. brachynemus Pfaff, 1933
   |  `-- N. maindroni (Sauvage, 1880)
   |-- Nes longus (Nichols, 1914) (Orangespotted goby)
   |-- Parkraemeria ornata Whitley, 1951
   |--o Pomatoschistus [11]
   |  |-- P. bathi Miller, 1982
   |  |-- P. canestrinii (Ninni, 1883)
   |  |-- P. knerii (Steindachner, 1861)
   |  |-- P. lozanoi (de Buen, 1923) (Lozano's goby)
   |  |-- P. marmoratus (Risso, 1810) (Marbled goby)
   |  |-- P. microps (Krøyer, 1838)
   |  |-- P. minutus (Pallas, 1770) (hietatokko; Sand goby)
   |  |-- P. norvegicus (Collett, 1902) (Norway goby)
   |  |-- P. pictus (Malm, 1865) (Painted goby)
   |  |-- P. quagga (Heckel, 1837)
   |  `-- P. tortonesei Miller, 1969
   |-- Priolepis [Quisquilius] [21]
   |-- Risor ruber (Rosén, 1911) Tusked goby
   |-- Trimma [24]
   |--o Trimmatom [2]
   |  |-- T. eviotops (Schultz, 1943) (Red-barred rubble goby)
   |  `-- T. nanus Winterbottom & Emery, 1981
   |--o Varicus [3]
   |  |-- V. bucca Robins & Böhlke, 1961
   |  |-- V. imswe Greenfield, 1981 (Whiteband goby)
   |  `-- V. marilynae Gilmore, 1979 (Orangebelly goby)
   |-- Zebrus zebrus (Risso, 1827)
   `== other 98 genera?

Reference(s):