After Nelson, 1994, and Murdy, 2002, with Recent species from Froese & Pauly, 2001 [“The Fishbase”]

<==o Amblyopinae (eel gobies; ankeriastokot) [11/?]
   |--o Brachyamblyopus [5]
   |  |-- B. anotus (Franz, 1910)
   |  |-- B. brachysoma (Bleeker, 1853)
   |  |-- B. burmanicus Hora, 1926
   |  |-- B. intermedius (Volz, 1903)
   |  `-- B. urolepis (Bleeker, 1852) (Scaleless worm goby)
   |?-o Taenioides [8]
   |  |-- T. anguillaris (Linnaeus, 1758) (Eel worm goby)
   |  |-- T. buchanani (Day, 1873) (Burmese gobyeel)
   |  |-- T. cirratus (Blyth, 1860) (Bearded worm goby)
   |  |-- T. esquivel Smith, 1947 (Bulldog eelgoby)
   |  |-- T. gracilis (Valenciennes, 1837) (Slender eel goby)
   |  |-- T. jacksoni Smith, 1943 (Bearded eelgoby)
   |  |-- T. limicola Smith, 1964
   |  `-- T. nigrimarginatus Hora, 1924 (Blackfin eel goby)
   `--o “Trypauchen” -group
      |-- Amblyotrypauchen [not recognized by the Fishbase]
      |-- Caragobius typhlops Smith & Seale, 1906
      |-- Ctenotrypauchen microcephalus (Bleeker, 1860) (Comb goby)
      |--o Gobioides [6]
      |  |-- G. africanus (Giltay, 1935)
      |  |-- G. brevis (Günther, 1864)
      |  |-- G. broussoneti Lacépède, 1800 (Violet goby)
      |  |-- G. grahamae Palmer & Wheeler, 1955
      |  |-- G. peruanus (Steindachner, 1880) (Peruvian eelgoby)
      |  `-- G. sagitta (Günther, 1862)
      |-- Karsten totoyensis (Garman, 1903) Murdy, 2002 [Gobioides totoyensis Garman, 1903; Taenioides coecus Weber, 1913]
      |--o Trypauchen [2]
      |  |-- T. raha Popta, 1922
      |  `-- T. vagina (Bloch & Schneider, 1801)
      `--o Trypauchenichthys [2]
         |-- T. sumatrensis Hardenberg, 1931
         `-- T. typus Bleeker, 1860

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