After Nelson, 1994, with Recent species from Froese & Pauly, 2001 [“The Fishbase”]

<==o Balitorini
   |--o Balitora
   |  |-- B. annamitica Kottelat, 1988
   |  |-- B. brucei Gray, 1830 (Gray's stone loach)
   |  |-- B. burmanica Hora, 1932 (Burmese stone loach)
   |  |-- B. kwangsiensis (Fang, 1930)
   |  |-- B. lancangjiangensis (Zheng, 1980)
   |  |-- B. meridionalis Kottelat, 1988
   |  `-- B. mysorensis Hora, 1941 (Slender stone loach)
   |-- Bhavania australis (Jerdon, 1849) (Western Ghat loach)
   |--o Hemimyzon
   |  |-- H. confluens Kottelat, 2000
   |  |-- H. elongatus (Chen & Lin, 1985)
   |  |-- H. formosanum (Boulenger, 1894)
   |  |-- H. khonensis Kottelat, 2000
   |  |-- H. nanensis Doi & Kottelat, 1998
   |  |-- H. papilio Kottelat, 1998
   |  |-- H. pengi (Huang, 1982)
   |  |-- H. sinensis (Sauvage & Dabry de Thiersant, 1874)
   |  |-- H. taitungensis Tzeng & Shen, 1982
   |  `-- H. tchangi (Zheng, 1982)
   |-- Homaloptera [Balitoropsis]
   |-- Lepturichthys
   |?- Neohomaloptera johorensis (Herre, 1944)
   |--o Sinogastromyzon
   |  |-- S. puliensis Liang, 1974
   |  |-- S. sichangensis Chang, 1994
   |  `-- S. wui Fang, 1930
   |--o Travancoria
   |  |-- T. elongata Pethiyagoda & Kottelat, 1994
   |  `-- T. jonesi Hora, 1941 (Travancore loach)
   |?-o Vanmanenia
   |  |-- V. crassicauda Kottelat, 2000
   |  |-- V. gymnetrus Chen, 1980
   |  |-- V. hainanensis Chen & Zheng, 1980
   |  |-- V. pingchowensis (Fang, 1935)
   |  |-- V. serrilineata Kottelat, 2000
   |  |-- V. striata Chen, 1980
   |  `-- V. xinyiensis Zheng & Chen, 1980
   `== other genera?

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