outdir results
load pedigree solar.ped
load markers solar.marker
load map -haldane solar.map
load freq solar.freq
load phenotypes solar.phen
trait TRAIT_QTL
polygenic -screen

exec mkdir /home/tjuu/omat/autogscan/simulated_genome_wide_scan/ibd
ibddir /home/tjuu/omat/autogscan/simulated_genome_wide_scan/ibd
exec mkdir /home/tjuu/omat/autogscan/simulated_genome_wide_scan/mibd
mibddir /home/tjuu/omat/autogscan/simulated_genome_wide_scan/mibd
verbosity min
ibd -nomle
mibd 1
verbosity default
twopoint
interval 5
chromosome 1
multipoint -ov
