CBRUplugin Ver 1.31b
What is it?
CBRU-plugin is a modified menu in EEGlab. It will offer great possibilities to explore your pre-processed datasets in a graphical user interface.
The layout has been designed to CBRU’s own needs to minimize the usage of Matlab-scripts and thus to uniform the basic procedures in our unit. The main idea of the plugin is
to give better insight into data within a short exploration. Same kind of interface has been developed for Besa .mul-files, as well.
The newest CBRU plugin can be found on P:\h630\cbru_personnelshare\Software. The package will not be found on this site anymore but the revision history will be updated.
Download CBRU plug-in Quick Tutorial from here! (Updated 31.12.2012)
What does it include?
- Sub-grouping (include – exclude subjects with a mouse click and/or group conditions)
- Curve plotting (Conditions or groups, subtraction curves, multi-plots with more channels, butterfly plots)
- Scalp-plots within a requested time window
- Mean amplitudes and peak amplitudes (within a requested time window) into ASCII (text file)
Revision history
mulplugin ver 1.31b
31.12.2012
- NEW! Cohen's d value in tests
- NEW! T-tests also across groups
- NEW! All channel indicies are read by label which enables use of incongruent channel lists
- UPDATED! Reference channel is defined in string type
- FIXED! Channel selection plot allows average plots only
mulplugin ver 1.30b
12.11.2012
- NEW! Scalp plot movie in 10ms intervals (frame speed adjustable in options)
- NEW! Plotting on existing figures
- NEW! Save and load .mat format
- NEW! Re-referencing in Advanced tools
- NEW! Running t-tests with an adjustable time window (one-sample and paired)
- FIXED! Auto scaling only for y-axis
- FIXED! Mul list/file creator had a bug with filenames
- UPDATED! Old-fashioned tab browsing has been replaced with buttons
mulplugin ver 1.28b
12.9.2012
- NEW! Auto scaling in plots. This feature makes "off-axis" plotting possible
- NEW! 3D head plots
- NEW! More options for head plot
- FIXED! There was a bug in baseline removal tool (with end value of time window < 0)
- MODIFIED! Error dialogs have been made more informative
- FIXED! 'Clear all' button didn't empty condition groups
mulplugin ver 1.27b
4.9.2012
- NEW! Mul-filenames can be created with a GUI (similar than Study creator in CBRUplugin). A list will be generated and the data loaded automatically. This is found in "Load" menu
- NEW! Button and field positioning and resizing has been made
- NEW! Scalp map smoothnes can be modified in options
- NEW! No need to run EEGlab in the beginning anymore
- FIXED! Head plot scales better in full window
- FIXED! "Choose all" check boxes have been changed to buttons
- FIXED! Error handling has been made better
- FIXED! Menu titles have been made more informative
mulplugin ver 1.25b
30.1.2012
- FIXED! Bug in ROI group figure handles
mulplugin ver 1.24b
31.3.2011
- NEW! Data can be loaded as a structured .mat file instead of multiple .mul files
- NEW! Sample amplitudes can be written in ASCII format: one channel's peak latency definitions can be used for all other channels
- FIXED! Minor bug in time axis max value
mulplugin ver 1.23
8.3.2011
- FIXED! Bug in head plot (labels and positions were incorrect in rare cases)
- FIXED! Definitely no more false alarms with the "No data"-dialog
- NEW! Head plot scaling can be changed in options
mulplugin ver 1.22
22.2.2011
- FIXED! No more false alarms with the "No data"-dialog
- NEW! ROI curves can be plotted and quantified
- NEW! whole head plot using the original channel locations (larger plots by clicking over the map)
mulplugin ver 1.2
27.10.2010
- plugin integrated with EEGlab v9.0.2.2b
- more warnings if data are inconsistent
- channel data is not loaded related to channel number but the label instead
- changes in GUI: counters for amount of currently chosen subjects and active condition groups
- curve plot allows to show the names of individual patients by clicking the curves
- option for low-pass filtering in quantification
- totally new and clearer data structure
- clearer storage for handles
mulplugin ver 1.11
27.9.2010
- Major bug: Averaging subjects caused wrong results.. Fixed.
mulplugin ver 1.1
21.9.2010
- plugin integrated with EEGlab v9.0.0.2b
- slightly faster analysis
- minor bug fixes (related to the GUI-windows and clearing global variables)
- no more need to start eeglab at start-up
- no more need to set the 'Current folder' in Matlab
- automaticly opens up 'make sub-groups'-window if files have been loaded successfully
- names of conditions appear in figures and exported files
- channels are searched by label name instead of running number to prevent accidents
- channel order in multiplot has been changed to correspond the labels in 20-10 system
- minor changes in object positioning in GUI
- bug fixes for Linux
- + filename re-generator (advanced)
mulplugin ver 1.0 (the first release)
26.3.2010
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CBRUplugin ver 1.31b
31.12.2012
- NEW! Cohen's d value in tests
- NEW! T-tests also across groups
- NEW! All channel indicies are read by label which enables use of incongruent channel lists
- UPDATED! Reference channel is defined in string type
- FIXED! Channel selection plot allows average plots only (like it should have been)
CBRUplugin ver 1.30b
12.11.2012
- NEW! Re-referencing available in Advanced tools
- NEW! Scalp plot movie in 10ms intervals (frame speed adjustable in options)
- NEW! Plotting on existing figures
- NEW! Save and load .mat format (loading: type CBRUplugin in command window)
- NEW! Running t-tests with an adjustable time window (one-sample and paired)
- FIXED! Auto scaling only for y-axis
- UPDATED! Old-fashioned tab browsing has been replaced with buttons
CBRUplugin ver 1.29b
12.9.2012
- NEW! Auto scaling in plots. This feature makes "off-axis" plotting possible
- NEW! 3D head plots
- NEW! More options for head plot
CBRUplugin ver 1.27b
4.9.2012
- UPDATED! plugin integrated with EEGlab v10.2.5.8b
- FIXED! online trial counter works better
- FIXED! no update button hit needed anymore (if the STUDY is not changed)
- FIXED! invalid memory settings will give a warning
- FIXED! No need to set study info settings anymore
- NEW! some buttons/checkboxes have been clarified on the main tab
- NEW! single trials can be plotted
- NEW! options window renewed
- NEW! smoothnes of scalp map interpolation can be changed in options
- FIXED! Whole head plot scales better in full size window
- NEW! Study creator asks for saving the list info before closing
CBRUplugin ver 1.24b
31.3.2011
- UPDATED! plugin integrated with EEGlab v10.0.1.0b
- NEW! Sample amplitudes can be written in ASCII format: one channel's peak latency definitions can be used for all other channels
CBRUplugin ver 1.23
8.3.2011
- FIXED! Bug in head plot (labels and positions were incorrect in rare cases)
- FIXED! Definitely no more false alarms with the "No data"-dialog
- NEW! Head plot scaling can be changed in options
CBRUplugin ver 1.22
22.2.2011
- UPDATED! plugin integrated with EEGlab v9.0.4.5s
- FIXED! Bug in combined conditions within median curves
- FIXED! No more false alarms with the "No data"-dialog
- NEW! ROI curves can be plotted and quantified
- NEW! deviation of median signal can be evaluated in curve plot by means of the nearest x trials
- NEW! whole head plot using the original channel locations (larger plots by clicking over the map)
- NEW! trial numbers can be saved to text file
CBRUplugin ver 1.21
22.11.2010
- plugin integrated with EEGlab v9.0.3.3b
- Main window is now integrated with the Sub-group-window
- Standard deviation in curve plot
- Progress bar added
- parts of the GUI have been resized
- Group window shows the amount of trials and active condition groups/subjects
- + regrouping of subjects can be done in studyMaker independent of filenames
CBRUplugin ver 1.2
27.10.2010
- plugin integrated with EEGlab v9.0.2.2b
- more warnings if data are inconsistent
- channel data is not loaded related to channel number but the label instead
- changes in GUI: counters for amount of currently chosen subjects and active condition groups
- curve plot allows to show the names of individual patients by clicking the curves
- option for median signals in curve plot and quantification
- option for low-pass filtering in quantification
- totally new and clearer data structure
- clearer storage for handles
- + new feature for StudyMaker (order of the parts in name can be changed)
CBRUplugin ver 1.11
27.9.2010
- Major bug: Averaging subjects caused wrong results.. Fixed.
CBRUplugin ver 1.1
21.9.2010
- plugin integrated with EEGlab v9.0.0.2b
- slightly faster analysis
- minor bug fixes (related to the GUI-windows and clearing global variables)
- automaticly opens up 'make sub-groups'-window if files have been loaded successfully
- names of conditions appear in figures and exported files
- channel order in multiplot has been changed to correspond the labels in 20-10 system
- minor changes in object positioning in GUI
- + practical GUI for creating studies in EEGlab
CBRUplugin ver 1.0 (the first release)
26.3.2010
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Contact information
Tommi Makkonen, laboratory engineer
Address:
Institute of Behavioural Sciences, University of Helsinki
PL 9 (Siltavuorenpenger 1 B)
00014 Helsingin yliopisto
E-mail:
tommi.makkonen@helsinki.fi