The publication list below includes only publications (\(N = 105\)) where M. Pirinen is an individually-named author in the main author list of the publication. Thus, it excludes the publications where the authorship of M. Pirinen is only through a membership in a consortium.
Rämö JT, Kiiskinen T, Seist R, Krebs K, Kanai M, Karjalainen J,
Kurki M, Hämäläinen E, Häppölä P, Havulinna AS, Hautakangas H; FinnGen;
Mägi R, Palta P, Esko T, Metspalu A, Pirinen M, Karczewski KJ, Ripatti
S, Milani L, Stankovic KM, Mäkitie A, Daly MJ, Palotie A.
Genome-wide screen of otosclerosis in population biobanks: 27 loci and
shared associations with skeletal structure.
Nat Commun. 2023 Jan
18;14(1):157. DOI:10.1038/s41467-022-32936-3, PMID:36653343, PMCID:PMC9849444.
Saarentaus EC, Karjalainen J, Rämö JT, Kiiskinen T, Havulinna AS,
Mehtonen J, Hautakangas H, Ruotsalainen S, Tamlander M, Mars N; FINNGEN;
Toppila-Salmi S, Pirinen M, Kurki M, Ripatti S, Daly M, Palotie T,
Mäkitie A, Palotie A.
Inflammatory and infectious upper respiratory
diseases associate with 41 genomic loci and type 2 inflammation.
Nat
Commun. 2023 Jan 18;14(1):83. DOI:10.1038/s41467-022-33626-w, PMID:36653354, PMCID:PMC9849224.
Kiiskinen T, Helkkula P, Krebs K, Karjalainen J, Saarentaus E,
Mars N, Lehisto A, Zhou W, Cordioli M, Jukarainen S, Rämö JT, Mehtonen
J, Veerapen K, Räsänen M, Ruotsalainen S, Maasha M; FinnGen; Niiranen T,
Tuomi T, Salomaa V, Kurki M, Pirinen M, Palotie A, Daly M, Ganna A,
Havulinna AS, Milani L, Ripatti S.
Genetic predictors of lifelong
medication-use patterns in cardiometabolic diseases.
Nat Med. 2023
Jan;29(1):209-218. DOI:10.1038/s41591-022-02122-5, PMID:36653479, PMCID:PMC9873570.
Leinonen JT, Mars N, Lehtonen LE, Ahola-Olli A, Ruotsalainen S,
Lehtimäki T, Kähönen M, Raitakari O; FinnGen Consortium; Piltonen T,
Daly M, Tuomi T, Ripatti S, Pirinen M, Tukiainen T.
Genetic analyses
implicate complex links between adult testosterone levels and health and
disease.
Commun Med (Lond). 2023 Jan 18;3(1):4. DOI:10.1038/s43856-022-00226-0, PMID:36653534, PMCID:PMC9849476.
Almangush A, Alabi RO, De Keukeleire S, Mäkitie AA, Pirinen M,
Leivo I.
Clinical significance of overall assessment of
tumor-infiltrating lymphocytes in oropharyngeal cancer: A
meta-analysis.
Pathol Res Pract. 2023 Mar;243:154342. DOI:10.1016/j.prp.2023.154342, PMID:36758415, PMCID: none.
Pirinen M.
linemodels: clustering effects based on linear
relationships.
Bioinformatics. 2023 Mar 1;39(3):btad115. DOI:10.1093/bioinformatics/btad115, PMID:36864614,
PMCID:PMC10005595.
Kaivola K, Pirinen M, Laaksovirta H, Jansson L, Rautila O, Launes
J, Hokkanen L, Lahti J, Eriksson JG, Strandberg TE, FinnGen, Tienari
PJ.
C9orf72 hexanucleotide repeat allele tagging SNPs: Associations
with ALS risk and longevity.
Front Genet. 2023 Mar 1;14:1087098. DOI:10.3389/fgene.2023.1087098, PMID:36936421, PMCID:PMC10014923.
Kivimäki M, Livingston G, Singh-Manoux A, Mars N, Lindbohm JV,
Pentti J, Nyberg ST, Pirinen M, Anderson EL, Hingorani AD, Sipilä
PN.
Estimating Dementia Risk Using Multifactorial Prediction
Models.
JAMA Netw Open. 2023 Jun 1;6(6):e2318132. DOI:10.1001/jamanetworkopen.2023.18132, PMID:37310738,
PMCID:PMC10265307.
Winsvold BS, Harder AVE, Ran C, Chalmer MA, Dalmasso MC,
Ferkingstad E, Tripathi KP, Bacchelli E, Børte S, Fourier C, Petersen
AS, Vijfhuizen LS, Magnusson SH, O’Connor E, Bjornsdottir G, Häppölä P,
Wang YF, Callesen I, Kelderman T, Gallardo VJ, de Boer I, Olofsgård FJ,
Heinze K, Lund N, Thomas LF, Hsu CL, Pirinen M, Hautakangas H, Ribasés
M, Guerzoni S, Sivakumar P, Yip J, Heinze A, Küçükali F, Ostrowski SR,
Pedersen OB, Kristoffersen ES, Martinsen AE, Artigas MS, Lagrata S,
Cainazzo MM, Adebimpe J, Quinn O, Göbel C, Cirkel A, Volk AE,
Heilmann-Heimbach S, Skogholt AH, Gabrielsen ME, Wilbrink LA, Danno D,
Mehta D, Guðbjartsson DF; HUNT All-In Headache, The International
Headache Genetics Consortium, DBDS Genomic Consortium; Rosendaal FR,
Willems van Dijk K, Fronczek R, Wagner M, Scherer M, Göbel H, Sleegers
K, Sveinsson OA, Pani L, Zoli M, Ramos-Quiroga JA, Dardiotis E,
Steinberg A, Riedel-Heller S, Sjöstrand C, Thorgeirsson TE, Stefansson
H, Southgate L, Trembath RC, Vandrovcova J, Noordam R, Paemeleire K,
Stefansson K, Fann CS, Waldenlind E, Tronvik E, Jensen RH, Chen SP,
Houlden H, Terwindt GM, Kubisch C, Maestrini E, Vikelis M, Pozo-Rosich
P, Belin AC, Matharu M, van den Maagdenberg AMJM, Hansen TF, Ramirez A,
Zwart JA; International Consortium for Cluster Headache Genetics.
Cluster Headache Genomewide Association Study and Meta-Analysis
Identifies Eight Loci and Implicates Smoking as Causal Risk Factor.
Ann Neurol. 2023 Oct;94(4):713-726. DOI:10.1002/ana.26743, PMID:37486023, PMCID: none.
Ottensmann L, Tabassum R, Ruotsalainen SE, Gerl MJ, Klose C,
Widén E; FinnGen; Simons K, Ripatti S, Pirinen M.
Genome-wide
association analysis of plasma lipidome identifies 495 genetic
associations.
Nat Commun. 2023 Oct 31;14(1):6934. DOI:10.1038/s41467-023-42532-8, PMID:37907536, PMCID:PMC10618167.
Wahab A, Onkamo O, Pirinen M, Almangush A, Salo T.
The
budding and depth of invasion model in oral cancer: A systematic review
and meta-analysis.
Oral Dis. 2022 Mar;28(2):275-283. DOI:10.1111/odi.13671, PMID:33031610, PMCID:
none.
Bahrami S, Hindley G, Winsvold BS, O’Connell KS, Frei O, Shadrin
A, Cheng W, Bettella F, Rødevand L, Odegaard KJ, Fan CC, Pirinen MJ,
Hautakangas HM; HUNT All-In Headache; Dale AM, Djurovic S, Smeland OB,
Andreassen OA.
Dissecting the shared genetic basis of migraine and
mental disorders using novel statistical tools.
Brain. 2022 Mar
29;145(1):142-153. DOI:10.1093/brain/awab267, PMID:34273149, PMCID:PMC8967089.
Häppölä P, Gormley P, Nuottamo ME, Artto V, Sumelahti ML, Nissilä
M, Keski-Säntti P, Ilmavirta M, Kaunisto MA, Hämäläinen EI, Ripatti S,
Pirinen M, Wessman M, Palotie A, Kallela M; International Headache
Genetics Consortium (IHGC).
Polygenic risk provides biological
validity for the ICHD-3 criteria among Finnish migraine families.
Cephalalgia. 2022 Apr;42(4-5):345-356. DOI:10.1177/03331024211045651, PMID:34648375, PMCID:PMC8988286.
Hautakangas H, Winsvold BS, Ruotsalainen SE, Bjornsdottir G,
Harder AVE, Kogelman LJA, Thomas LF, Noordam R, Benner C, Gormley P,
Artto V, Banasik K, Bjornsdottir A, Boomsma DI, Brumpton BM, Burgdorf
KS, Buring JE, Chalmer MA, de Boer I, Dichgans M, Erikstrup C, Färkkilä
M, Garbrielsen ME, Ghanbari M, Hagen K, Häppölä P, Hottenga JJ,
Hrafnsdottir MG, Hveem K, Johnsen MB, Kähönen M, Kristoffersen ES, Kurth
T, Lehtimäki T, Lighart L, Magnusson SH, Malik R, Pedersen OB, Pelzer N,
Penninx BWJH, Ran C, Ridker PM, Rosendaal FR, Sigurdardottir GR,
Skogholt AH, Sveinsson OA, Thorgeirsson TE, Ullum H, Vijfhuizen LS,
Widén E, van Dijk KW; International Headache Genetics Consortium; HUNT
All-in Headache; Danish Blood Donor Study Genomic Cohort; Aromaa A,
Belin AC, Freilinger T, Ikram MA, Järvelin MR, Raitakari OT, Terwindt
GM, Kallela M, Wessman M, Olesen J, Chasman DI, Nyholt DR, Stefánsson H,
Stefansson K, van den Maagdenberg AMJM, Hansen TF, Ripatti S, Zwart JA,
Palotie A, Pirinen M.
Genome-wide analysis of 102,084 migraine cases
identifies 123 risk loci and subtype-specific risk alleles.
Nat
Genet. 2022 Feb;54(2):152-160. DOI:10.1038/s41588-021-00990-0, PMID:35115687, PMCID:PMC8837554.
Nuottamo ME, Häppölä P, Artto V, Hautakangas H, Pirinen M,
Hiekkalinna T, Ellonen P, Lepistö M, Hämäläinen E; International
Headache Genetics Consortium (IHGC), FinnGenConsortium; Siren A,
Lehesjoki AE, Kallela M, Palotie A, Kaunisto MA, Wessman M.
NCOR2 is
a novel candidate gene for migraine-epilepsy phenotype.
Cephalalgia.
2022 Jun;42(7):631-644. DOI:10.1177/03331024211068065, PMID:35166138, PMCID: none.
Elovainio M, Lahti J, Pirinen M, Pulkki-Råback L, Malmberg A,
Lipsanen J, Virtanen M, Kivimäki M, Hakulinen C.
Association of
social isolation, loneliness and genetic risk with incidence of
dementia: UK Biobank Cohort Study.
BMJ Open. 2022 Feb
23;12(2):e053936. DOI:10.1136/bmjopen-2021-053936, PMID:35197341, PMCID:PMC8867309.
Tamlander M, Mars N, Pirinen M; FinnGen; Widén E, Ripatti S.
Integration of questionnaire-based risk factors improves polygenic risk
scores for human coronary heart disease and type 2 diabetes.
Commun
Biol. 2022 Feb 23;5(1):158. DOI:10.1038/s42003-021-02996-0, PMID:35197564, PMCID:PMC8866413.
Trubetskoy V, Pardiñas AF, Qi T, Panagiotaropoulou G, Awasthi S,
Bigdeli TB, Bryois J, Chen CY, Dennison CA, Hall LS, Lam M, Watanabe K,
Frei O, Ge T, Harwood JC, Koopmans F, Magnusson S, Richards AL,
Sidorenko J, Wu Y, Zeng J, Grove J, Kim M, Li Z, Voloudakis G, Zhang W,
Adams M, Agartz I, Atkinson EG, Agerbo E, Al Eissa M, Albus M, Alexander
M, Alizadeh BZ, Alptekin K, Als TD, Amin F, Arolt V, Arrojo M, Athanasiu
L, Azevedo MH, Bacanu SA, Bass NJ, Begemann M, Belliveau RA, Bene J,
Benyamin B, Bergen SE, Blasi G, Bobes J, Bonassi S, Braun A, Bressan RA,
Bromet EJ, Bruggeman R, Buckley PF, Buckner RL, Bybjerg-Grauholm J, Cahn
W, Cairns MJ, Calkins ME, Carr VJ, Castle D, Catts SV, Chambert KD, Chan
RCK, Chaumette B, Cheng W, Cheung EFC, Chong SA, Cohen D, Consoli A,
Cordeiro Q, Costas J, Curtis C, Davidson M, Davis KL, de Haan L,
Degenhardt F, DeLisi LE, Demontis D, Dickerson F, Dikeos D, Dinan T,
Djurovic S, Duan J, Ducci G, Dudbridge F, Eriksson JG, Fañanás L,
Faraone SV, Fiorentino A, Forstner A, Frank J, Freimer NB, Fromer M,
Frustaci A, Gadelha A, Genovese G, Gershon ES, et al.
Mapping
genomic loci implicates genes and synaptic biology in schizophrenia.
Nature. 2022 Apr;604(7906):502-508. DOI:10.1038/s41586-022-04434-5, PMID:35396580, PMCID:PMC9392466.
Mars N, Kerminen S, Feng YA, Kanai M, Läll K, Thomas LF, Skogholt
AH, Della Briotta Parolo P; Biobank Japan Project; FinnGen; Neale BM,
Smoller JW, Gabrielsen ME, Hveem K, Mägi R, Matsuda K, Okada Y, Pirinen
M, Palotie A, Ganna A, Martin AR, Ripatti S.
Genome-wide risk
prediction of common diseases across ancestries in one million
people.
Cell Genom. 2022 Apr 13;2(4):None. DOI:10.1016/j.xgen.2022.100118, PMID:35591975, PMCID:PMC9010308.
Jukarainen S, Kiiskinen T, Kuitunen S, Havulinna AS, Karjalainen
J, Cordioli M, Rämö JT, Mars N; FinnGen; Samocha KE, Ollila HM, Pirinen
M, Ganna A.
Genetic risk factors have a substantial impact on
healthy life years.
Nat Med. 2022 Sep;28(9):1893-1901. DOI:10.1038/s41591-022-01957-2, PMID:36097220, PMCID:PMC9499866.
Tabassum R, Ruotsalainen S, Ottensmann L, Gerl MJ, Klose C,
Tukiainen T, Pirinen M, Simons K, Widén E, Ripatti S.
Lipidome- and
Genome-Wide Study to Understand Sex Differences in Circulatory
Lipids.
J Am Heart Assoc. 2022 Oct 4;11(19):e027103. DOI:10.1161/JAHA.122.027103, PMID:36193934, PMCID:PMC9673737.
Partanen JJ, Häppölä P, Zhou W, Lehisto AA, Ainola M, Sutinen E,
Allen RJ, Stockwell AD, Leavy OC, Oldham JM, Guillen-Guio B, Cox NJ,
Hirbo JB, Schwartz DA, Fingerlin TE, Flores C, Noth I, Yaspan BL,
Jenkins RG, Wain LV, Ripatti S, Pirinen M; International IPF Genetics
Consortium; Global Biobank Meta-Analysis Initiative (GBMI); Laitinen T,
Kaarteenaho R, Myllärniemi M, Daly MJ, Koskela JT.
Leveraging global
multi-ancestry meta-analysis in the study of idiopathic pulmonary
fibrosis genetics.
Cell Genom. 2022 Oct 12;2(10):100181. DOI:10.1016/j.xgen.2022.100181, PMID:36777997, PMCID:PMC9903787.
COVID-19 Host Genetics Initiative.
A first update on mapping
the human genetic architecture of COVID-19.
Nature. 2022
Aug;608(7921):E1-E10. DOI:10.1038/s41586-022-04826-7 , PMID:35922517, PMCID: none.
Mars N, Kerola AM, Kauppi MJ, Pirinen M, Elonheimo O, Sokka-Isler
T.
Cluster analysis identifies unmet healthcare needs among patients
with rheumatoid arthritis.
Scand J Rheumatol. 2022
Sep;51(5):355-362. DOI:10.1080/03009742.2021.1944306 , PMID:34511040, PMCID:
none.
Buchwald J, Chenoweth MJ, Palviainen T, Zhu G, Benner C, Gordon
S, Korhonen T, Ripatti S, Madden PAF, Lehtimäki T, Raitakari OT, Salomaa
V, Rose RJ, George TP, Lerman C, Pirinen M, Martin NG, Kaprio J, Loukola
A, Tyndale RF.
Genome-wide association meta-analysis of nicotine
metabolism and cigarette consumption measures in smokers of European
descent.
Mol Psychiatry. 2021 Jun;26(6):2212-2223. DOI:10.1038/s41380-020-0702-z, PMID:32157176, PMCID:PMC7483250.
Ruotsalainen SE, Partanen JJ, Cichonska A, Lin J, Benner C,
Surakka I; FinnGen; Reeve MP, Palta P, Salmi M, Jalkanen S, Ahola-Olli
A, Palotie A, Salomaa V, Daly MJ, Pirinen M, Ripatti S, Koskela J.
An expanded analysis framework for multivariate GWAS connects
inflammatory biomarkers to functional variants and disease.
Eur J
Hum Genet. 2021 Feb;29(2):309-324. DOI:10.1038/s41431-020-00730-8, PMID:33110245, PMCID:PMC7868371.
Alabi RO, Mäkitie AA, Pirinen M, Elmusrati M, Leivo I, Almangush
A.
Comparison of nomogram with machine learning techniques for
prediction of overall survival in patients with tongue cancer.
Int J
Med Inform. 2021 Jan;145:104313. DOI:10.1016/j.ijmedinf.2020.104313, PMID:33142259, PMCID:
none.
Hassan S, Surakka I, Taskinen MR, Salomaa V, Palotie A, Wessman
M, Tukiainen T, Pirinen M, Palta P, Ripatti S.
High-resolution
population-specific recombination rates and their effect on phasing and
genotype imputation.
Eur J Hum Genet. 2021 Apr;29(4):615-624. DOI:10.1038/s41431-020-00768-8, PMID:33249422, PMCID:PMC8114909.
Kerminen S, Cerioli N, Pacauskas D, Havulinna AS, Perola M,
Jousilahti P, Salomaa V, Daly MJ, Vyas R, Ripatti S, Pirinen M.
Changes in the fine-scale genetic structure of Finland through the 20th
century.
PLoS Genet. 2021 Mar 4;17(3):e1009347. DOI:10.1371/journal.pgen.1009347, PMID:33661898,
PMCID:PMC7932171.
Ahlström S, Bergman P, Jokela R, Ottensmann L, Ahola-Olli A,
Pirinen M, Olkkola KT, Kaunisto MA, Kalso E.
First genome-wide
association study on rocuronium dose requirements shows association with
SLCO1A2.
Br J Anaesth. 2021 May;126(5):949-957. DOI:10.1016/j.bja.2021.01.029, PMID:33676726, PMCID:PMC8132880.
Almangush A, Alabi RO, Troiano G, Coletta RD, Salo T, Pirinen M,
Mäkitie AA, Leivo I.
Clinical significance of tumor-stroma ratio in
head and neck cancer: a systematic review and meta-analysis.
BMC
Cancer. 2021 Apr 30;21(1):480. DOI:10.1186/s12885-021-08222-8, PMID:33931044, PMCID:PMC8086072.
Alabi RO, Youssef O, Pirinen M, Elmusrati M, Mäkitie AA, Leivo I,
Almangush A.
Machine learning in oral squamous cell carcinoma:
Current status, clinical concerns and prospects for future-A systematic
review.
Artif Intell Med. 2021 May;115:102060. DOI:10.1016/j.artmed.2021.102060, PMID:34001326, PMCID:
none.
Palomäki A; FinnGen Rheumatology Clinical Expert Group; Palotie
A, Koskela J, Eklund KK, Pirinen M; FinnGen; Ripatti S, Laitinen T, Mars
N.
Lifetime risk of rheumatoid arthritis-associated interstitial
lung disease in MUC5B mutation carriers.
Ann Rheum Dis. 2021
Dec;80(12):1530-1536. DOI:10.1136/annrheumdis-2021-220698, PMID:34344703,
PMCID:PMC8600604.
Venkataraman GR, DeBoever C, Tanigawa Y, Aguirre M, Ioannidis AG,
Mostafavi H, Spencer CCA, Poterba T, Bustamante CD, Daly MJ, Pirinen M,
Rivas MA.
Bayesian model comparison for rare-variant association
studies.
Am J Hum Genet. 2021 Dec 2;108(12):2354-2367. DOI:10.1016/j.ajhg.2021.11.005, PMID:34822764, PMCID:PMC8715195.
Ripatti P, Rämö JT, Mars NJ, Fu Y, Lin J, Söderlund S, Benner C,
Surakka I, Kiiskinen T, Havulinna AS, Palta P, Freimer NB, Widén E,
Salomaa V, Tukiainen T, Pirinen M, Palotie A, Taskinen MR, Ripatti S;
FinnGen†.
Polygenic Hyperlipidemias and Coronary Artery Disease
Risk.
Circ Genom Precis Med. 2020 Apr;13(2):e002725. DOI:10.1161/CIRCGEN.119.002725, PMID:32154731, PMCID:PMC7176338.
Lin J, Tabassum R, Ripatti S, Pirinen M.
MetaPhat: Detecting
and Decomposing Multivariate Associations From Univariate Genome-Wide
Association Statistics.
Front Genet. 2020 May 15;11:431. DOI:10.3389/fgene.2020.00431, PMID:32499813, PMCID:PMC7242752.
Gilchrist JJ, Uyoga S, Pirinen M, Rautanen A, Mwarumba S, Njuguna
P, Mturi N; Kenyan Bacteraemia Study Group; Hill AVS, Scott JAG,
Williams TN.
Risk of pneumococcal bacteremia in Kenyan children with
glucose-6-phosphate dehydrogenase deficiency.
BMC Med. 2020 Jun
15;18(1):148. DOI:10.1186/s12916-020-01604-y, PMID:32536341, PMCID:PMC7294654.
Almangush A, Pirinen M, Youssef O, Mäkitie AA, Leivo I.
Risk
stratification in oral squamous cell carcinoma using staging of the
eighth American Joint Committee on Cancer: Systematic review and
meta-analysis.
Head Neck. 2020 Oct;42(10):3002-3017. DOI:10.1002/hed.26344, PMID:32548858, PMCID:
none.
Weissbrod O, Hormozdiari F, Benner C, Cui R, Ulirsch J, Gazal S,
Schoech AP, van de Geijn B, Reshef Y, Márquez-Luna C, O’Connor L,
Pirinen M, Finucane HK, Price AL.
Functionally informed fine-mapping
and polygenic localization of complex trait heritability.
Nat Genet.
2020 Dec;52(12):1355-1363. DOI:10.1038/s41588-020-00735-5, PMID:33199916, PMCID:PMC7710571.
Mars N, Widén E, Kerminen S, Meretoja T, Pirinen M, Della Briotta
Parolo P, Palta P; FinnGen; Palotie A, Kaprio J, Joensuu H, Daly M,
Ripatti S.
The role of polygenic risk and susceptibility genes in
breast cancer over the course of life.
Nat Commun. 2020 Dec
14;11(1):6383. DOI:10.1038/s41467-020-19966-5, PMID:33318493, PMCID:PMC7736877.
Sieviläinen M, Almahmoudi R, Al-Samadi A, Salo T, Pirinen M,
Almangush A.
The prognostic value of immune checkpoints in oral
squamous cell carcinoma.
Oral Dis. 2019 Sep;25(6):1435-1445. DOI:10.1111/odi.12991, PMID:30315712, PMCID:
none.
Almangush A, Youssef O, Pirinen M, Sundström J, Leivo I, Mäkitie
AA.
Does evaluation of tumour budding in diagnostic biopsies have a
clinical relevance? A systematic review.
Histopathology. 2019
Mar;74(4):536-544. DOI:10.1111/his.13793, PMID:30450728, PMCID: none.
Kurki MI, Saarentaus E, Pietiläinen O, Gormley P, Lal D, Kerminen
S, Torniainen-Holm M, Hämäläinen E, Rahikkala E, Keski-Filppula R,
Rauhala M, Korpi-Heikkilä S, Komulainen-Ebrahim J, Helander H, Vieira P,
Männikkö M, Peltonen M, Havulinna AS, Salomaa V, Pirinen M, Suvisaari J,
Moilanen JS, Körkkö J, Kuismin O, Daly MJ, Palotie A.
Contribution
of rare and common variants to intellectual disability in a sub-isolate
of Northern Finland.
Nat Commun. 2019 Jan 24;10(1):410. DOI:10.1038/s41467-018-08262-y, PMID:30679432, PMCID:PMC6345990.
Trochet H, Pirinen M, Band G, Jostins L, McVean G, Spencer
CCA.
Bayesian meta-analysis across genome-wide association studies
of diverse phenotypes.
Genet Epidemiol. 2019 Jul;43(5):532-547. DOI:10.1002/gepi.22202, PMID:30920090, PMCID:
none.
Rivas MA, Avila BE, Koskela J, Huang H, Stevens C, Pirinen M,
Haritunians T, Neale BM, Kurki M, Ganna A, Graham D, Glaser B, Peter I,
Atzmon G, Barzilai N, Levine AP, Schiff E, Pontikos N, Weisburd B, Lek
M, Karczewski KJ, Bloom J, Minikel EV, Petersen BS, Beaugerie L, Seksik
P, Cosnes J, Schreiber S, Bokemeyer B, Bethge J; International IBD
Genetics Consortium; NIDDK IBD Genetics Consortium; T2D-GENES
Consortium; Heap G, Ahmad T, Plagnol V, Segal AW, Targan S, Turner D,
Saavalainen P, Farkkila M, Kontula K, Palotie A, Brant SR, Duerr RH,
Silverberg MS, Rioux JD, Weersma RK, Franke A, Jostins L, Anderson CA,
Barrett JC, MacArthur DG, Jalas C, Sokol H, Xavier RJ, Pulver A, Cho JH,
McGovern DPB, Daly MJ.
Correction: Insights into the genetic
epidemiology of Crohn’s and rare diseases in the Ashkenazi Jewish
population.
PLoS Genet. 2019 May 30;15(5):e1008190. DOI:10.1371/journal.pgen.1008190, PMID:31145742,
PMCID:PMC6542503.
Kerminen S, Martin AR, Koskela J, Ruotsalainen SE, Havulinna AS,
Surakka I, Palotie A, Perola M, Salomaa V, Daly MJ, Ripatti S, Pirinen
M.
Geographic Variation and Bias in the Polygenic Scores of Complex
Diseases and Traits in Finland.
Am J Hum Genet. 2019 Jun
6;104(6):1169-1181. DOI:10.1016/j.ajhg.2019.05.001, PMID:31155286, PMCID:PMC6562021.
Rämö JT, Ripatti P, Tabassum R, Söderlund S, Matikainen N, Gerl
MJ, Klose C, Surma MA, Stitziel NO, Havulinna AS, Pirinen M, Salomaa V,
Freimer NB, Jauhiainen M, Palotie A, Taskinen MR, Simons K, Ripatti
S.
Coronary Artery Disease Risk and Lipidomic Profiles Are Similar
in Hyperlipidemias With Family History and Population-Ascertained
Hyperlipidemias.
J Am Heart Assoc. 2019 Jul 2;8(13):e012415. DOI:10.1161/JAHA.119.012415, PMID:31256696, PMCID:PMC6662358.
Locke AE, Steinberg KM, Chiang CWK, Service SK, Havulinna AS,
Stell L, Pirinen M, Abel HJ, Chiang CC, Fulton RS, Jackson AU, Kang CJ,
Kanchi KL, Koboldt DC, Larson DE, Nelson J, Nicholas TJ, Pietilä A,
Ramensky V, Ray D, Scott LJ, Stringham HM, Vangipurapu J, Welch R,
Yajnik P, Yin X, Eriksson JG, Ala-Korpela M, Järvelin MR, Männikkö M,
Laivuori H; FinnGen Project; Dutcher SK, Stitziel NO, Wilson RK, Hall
IM, Sabatti C, Palotie A, Salomaa V, Laakso M, Ripatti S, Boehnke M,
Freimer NB.
Exome sequencing of Finnish isolates enhances
rare-variant association power.
Nature. 2019 Aug;572(7769):323-328.
DOI:10.1038/s41586-019-1457-z, PMID:31367044, PMCID:PMC6697530.
Almahmoudi R, Kasanen M, Sieviläinen M, Salem A, Pirinen M, Salo
T, Al-Samadi A.
Prognostic value of blood and lymphatic vessel
markers in tongue cancer: A systematic review.
Cancer Sci. 2019
Nov;110(11):3424-3433. DOI:10.1111/cas.14189, PMID:31495050, PMCID:PMC6824997.
Tabassum R, Rämö JT, Ripatti P, Koskela JT, Kurki M, Karjalainen
J, Palta P, Hassan S, Nunez-Fontarnau J, Kiiskinen TTJ, Söderlund S,
Matikainen N, Gerl MJ, Surma MA, Klose C, Stitziel NO, Laivuori H,
Havulinna AS, Service SK, Salomaa V, Pirinen M; FinnGen Project;
Jauhiainen M, Daly MJ, Freimer NB, Palotie A, Taskinen MR, Simons K,
Ripatti S.
Genetic architecture of human plasma lipidome and its
link to cardiovascular disease.
Nat Commun. 2019 Sep 24;10(1):4329.
DOI:10.1038/s41467-019-11954-8, PMID:31551469, PMCID:PMC6760179.
Locke AE, Steinberg KM, Chiang CWK, Service SK, Havulinna AS,
Stell L, Pirinen M, Abel HJ, Chiang CC, Fulton RS, Jackson AU, Kang CJ,
Kanchi KL, Koboldt DC, Larson DE, Nelson J, Nicholas TJ, Pietilä A,
Ramensky V, Ray D, Scott LJ, Stringham HM, Vangipurapu J, Welch R,
Yajnik P, Yin X, Eriksson JG, Ala-Korpela M, Järvelin MR, Männikkö M,
Laivuori H; FinnGen Project; Dutcher SK, Stitziel NO, Wilson RK, Hall
IM, Sabatti C, Palotie A, Salomaa V, Laakso M, Ripatti S, Boehnke M,
Freimer NB.
Author Correction: Exome sequencing of Finnish isolates
enhances rare-variant association power.
Nature. 2019
Nov;575(7783):E4. DOI:10.1038/s41586-019-1726-x, PMID:31686056, PMCID: none.
Mars NJ, Kerola AM, Kauppi MJ, Pirinen M, Elonheimo O,
Sokka-Isler T.
Healthcare costs and outcomes in adult patients with
juvenile idiopathic arthritis: a population-based study.
Scand J
Rheumatol. 2019 Mar;48(2):114-120. DOI:10.1080/03009742.2018.1475580 , PMID:30070935, PMCID:
none.
Mars NJ, Kerola AM, Kauppi MJ, Pirinen M, Elonheimo O,
Sokka-Isler T.
Patients with rheumatic diseases share similar
patterns of healthcare resource utilization.
Scand J Rheumatol. 2019
Jul;48(4):300-307. DOI:10.1080/03009742.2018.1559878 , PMID:30836033, PMCID:
none.
Almangush A, Pirinen M, Heikkinen I, Mäkitie AA, Salo T, Leivo
I.
Tumour budding in oral squamous cell carcinoma: a
meta-analysis.
Br J Cancer. 2018 Feb 20;118(4):577-586. DOI:10.1038/bjc.2017.425, PMID:29190636, PMCID:PMC5830589.
Gilchrist JJ, Rautanen A, Fairfax BP, Mills TC, Naranbhai V,
Trochet H, Pirinen M, Muthumbi E, Mwarumba S, Njuguna P, Mturi N,
Msefula CL, Gondwe EN, MacLennan JM, Chapman SJ, Molyneux ME, Knight JC,
Spencer CCA, Williams TN, MacLennan CA, Scott JAG, Hill AVS.
Risk of
nontyphoidal Salmonella bacteraemia in African children is modified by
STAT4.
Nat Commun. 2018 Mar 9;9(1):1014. DOI:10.1038/s41467-017-02398-z, PMID:29523850, PMCID:PMC5844948.
Gilchrist JJ, Mentzer AJ, Rautanen A, Pirinen M, Mwarumba S,
Njuguna P, Mturi N; Wellcome Trust Case-Control Consortium 2; Kenyan
Bacteraemia Study Group; Williams TN, Scott JAG, Hill AVS.
Genetic
variation in VAC14 is associated with bacteremia secondary to diverse
pathogens in African children.
Proc Natl Acad Sci U S A. 2018 Apr
17;115(16):E3601-E3603. DOI:10.1073/pnas.1802071115, PMID:29588414, PMCID:PMC5910872.
Martin AR, Karczewski KJ, Kerminen S, Kurki MI, Sarin AP, Artomov
M, Eriksson JG, Esko T, Genovese G, Havulinna AS, Kaprio J, Konradi A,
Korányi L, Kostareva A, Männikkö M, Metspalu A, Perola M, Prasad RB,
Raitakari O, Rotar O, Salomaa V, Groop L, Palotie A, Neale BM, Ripatti
S, Pirinen M, Daly MJ.
Haplotype Sharing Provides Insights into
Fine-Scale Population History and Disease in Finland.
Am J Hum
Genet. 2018 May 3;102(5):760-775. DOI:10.1016/j.ajhg.2018.03.003, PMID:29706349, PMCID:PMC5986696.
Rivas MA, Avila BE, Koskela J, Huang H, Stevens C, Pirinen M,
Haritunians T, Neale BM, Kurki M, Ganna A, Graham D, Glaser B, Peter I,
Atzmon G, Barzilai N, Levine AP, Schiff E, Pontikos N, Weisburd B, Lek
M, Karczewski KJ, Bloom J, Minikel EV, Petersen BS, Beaugerie L, Seksik
P, Cosnes J, Schreiber S, Bokemeyer B, Bethge J; International IBD
Genetics Consortium; NIDDK IBD Genetics Consortium; T2D-GENES
Consortium; Heap G, Ahmad T, Plagnol V, Segal AW, Targan S, Turner D,
Saavalainen P, Farkkila M, Kontula K, Palotie A, Brant SR, Duerr RH,
Silverberg MS, Rioux JD, Weersma RK, Franke A, Jostins L, Anderson CA,
Barrett JC, MacArthur DG, Jalas C, Sokol H, Xavier RJ, Pulver A, Cho JH,
McGovern DPB, Daly MJ.
Insights into the genetic epidemiology of
Crohn’s and rare diseases in the Ashkenazi Jewish population.
PLoS
Genet. 2018 May 24;14(5):e1007329. DOI:10.1371/journal.pgen.1007329, PMID:29795570,
PMCID:PMC5967709.
Chheda H, Palta P, Pirinen M, McCarthy S, Walter K, Koskinen S,
Salomaa V, Daly M, Durbin R, Palotie A, Aittokallio T, Ripatti S.
Whole-genome view of the consequences of a population bottleneck using
2926 genome sequences from Finland and United Kingdom.
Eur J Hum
Genet. 2017 Apr;25(4):477-484. DOI:10.1038/ejhg.2016.205, PMID:28145424, PMCID:PMC5346294.
Wang L, Ko ER, Gilchrist JJ, Pittman KJ, Rautanen A, Pirinen M,
Thompson JW, Dubois LG, Langley RJ, Jaslow SL, Salinas RE, Rouse DC,
Moseley MA, Mwarumba S, Njuguna P, Mturi N; Wellcome Trust Case Control
Consortium 2; Kenyan Bacteraemia Study Group; Williams TN, Scott JA,
Hill AV, Woods CW, Ginsburg GS, Tsalik EL, Ko DC.
Human genetic and
metabolite variation reveals that methylthioadenosine is a prognostic
biomarker and an inflammatory regulator in sepsis.
Sci Adv. 2017 Mar
8;3(3):e1602096. DOI:10.1126/sciadv.1602096, PMID:28345042, PMCID:PMC5342653.
Pirinen M, Benner C, Marttinen P, Järvelin MR, Rivas MA, Ripatti
S.
biMM: efficient estimation of genetic variances and covariances
for cohorts with high-dimensional phenotype measurements.
Bioinformatics. 2017 Aug 1;33(15):2405-2407. DOI:10.1093/bioinformatics/btx166, PMID:28369165,
PMCID:PMC5860115.
Benner C, Havulinna AS, Järvelin MR, Salomaa V, Ripatti S,
Pirinen M.
Prospects of Fine-Mapping Trait-Associated Genomic
Regions by Using Summary Statistics from Genome-wide Association
Studies.
Am J Hum Genet. 2017 Oct 5;101(4):539-551. DOI:10.1016/j.ajhg.2017.08.012, PMID:28942963, PMCID:PMC5630179.
Kerminen S, Havulinna AS, Hellenthal G, Martin AR, Sarin AP,
Perola M, Palotie A, Salomaa V, Daly MJ, Ripatti S, Pirinen M.
Fine-Scale Genetic Structure in Finland.
G3 (Bethesda). 2017 Oct
5;7(10):3459-3468. DOI:10.1534/g3.117.300217, PMID:28983069, PMCID:PMC5633394.
Benner C, Spencer CC, Havulinna AS, Salomaa V, Ripatti S, Pirinen
M.
FINEMAP: efficient variable selection using summary data from
genome-wide association studies.
Bioinformatics. 2016 May
15;32(10):1493-501. DOI:10.1093/bioinformatics/btw018, PMID:26773131,
PMCID:PMC4866522.
Kettunen J, Demirkan A, Würtz P, Draisma HH, Haller T, Rawal R,
Vaarhorst A, Kangas AJ, Lyytikäinen LP, Pirinen M, Pool R, Sarin AP,
Soininen P, Tukiainen T, Wang Q, Tiainen M, Tynkkynen T, Amin N, Zeller
T, Beekman M, Deelen J, van Dijk KW, Esko T, Hottenga JJ, van Leeuwen
EM, Lehtimäki T, Mihailov E, Rose RJ, de Craen AJ, Gieger C, Kähönen M,
Perola M, Blankenberg S, Savolainen MJ, Verhoeven A, Viikari J,
Willemsen G, Boomsma DI, van Duijn CM, Eriksson J, Jula A, Järvelin MR,
Kaprio J, Metspalu A, Raitakari O, Salomaa V, Slagboom PE, Waldenberger
M, Ripatti S, Ala-Korpela M.
Genome-wide study for circulating
metabolites identifies 62 loci and reveals novel systemic effects of
LPA.
Nat Commun. 2016 Mar 23;7:11122. DOI:10.1038/ncomms11122,
PMID:27005778,
PMCID:PMC4814583.
Cichonska A, Rousu J, Marttinen P, Kangas AJ, Soininen P,
Lehtimäki T, Raitakari OT, Järvelin MR, Salomaa V, Ala-Korpela M,
Ripatti S, Pirinen M.
metaCCA: summary statistics-based multivariate
meta-analysis of genome-wide association studies using canonical
correlation analysis.
Bioinformatics. 2016 Jul 1;32(13):1981-9. DOI:10.1093/bioinformatics/btw052, PMID:27153689,
PMCID:PMC4920109.
Ripatti P, Rämö JT, Söderlund S, Surakka I, Matikainen N, Pirinen
M, Pajukanta P, Sarin AP, Service SK, Laurila PP, Ehnholm C, Salomaa V,
Wilson RK, Palotie A, Freimer NB, Taskinen MR, Ripatti S.
The
Contribution of GWAS Loci in Familial Dyslipidemias.
PLoS Genet.
2016 May 26;12(5):e1006078. DOI:10.1371/journal.pgen.1006078, PMID:27227539,
PMCID:PMC4882070.
Kenyan Bacteraemia Study Group; Wellcome Trust Case Control
Consortium 2 (WTCCC2); Rautanen A, Pirinen M, Mills TC, Rockett KA,
Strange A, Ndungu AW, Naranbhai V, Gilchrist JJ, Bellenguez C, Freeman
C, Band G, Bumpstead SJ, Edkins S, Giannoulatou E, Gray E, Dronov S,
Hunt SE, Langford C, Pearson RD, Su Z, Vukcevic D, Macharia AW, Uyoga S,
Ndila C, Mturi N, Njuguna P, Mohammed S, Berkley JA, Mwangi I, Mwarumba
S, Kitsao BS, Lowe BS, Morpeth SC, Khandwalla I; Kilifi Bacteraemia
Surveillance Group; Blackwell JM, Bramon E, Brown MA, Casas JP, Corvin
A, Duncanson A, Jankowski J, Markus HS, Mathew CG, Palmer CNA, Plomin R,
Sawcer SJ, Trembath RC, Viswanathan AC, Wood NW, Deloukas P, Peltonen L,
Williams TN, Scott JAG, Chapman SJ, Donnelly P, Hill AVS, Spencer
CCA.
Polymorphism in a lincRNA Associates with a Doubled Risk of
Pneumococcal Bacteremia in Kenyan Children.
Am J Hum Genet. 2016 Jun
2;98(6):1092-1100. DOI:10.1016/j.ajhg.2016.03.025, PMID:27236921, PMCID:PMC4908194.
Sieberts SK, Zhu F, García-García J, Stahl E, Pratap A, Pandey G,
Pappas D, Aguilar D, Anton B, Bonet J, Eksi R, Fornés O, Guney E, Li H,
Marín MA, Panwar B, Planas-Iglesias J, Poglayen D, Cui J, Falcao AO,
Suver C, Hoff B, Balagurusamy VSK, Dillenberger D, Neto EC, Norman T,
Aittokallio T, Ammad-Ud-Din M, Azencott CA, Bellón V, Boeva V, Bunte K,
Chheda H, Cheng L, Corander J, Dumontier M, Goldenberg A, Gopalacharyulu
P, Hajiloo M, Hidru D, Jaiswal A, Kaski S, Khalfaoui B, Khan SA, Kramer
ER, Marttinen P, Mezlini AM, Molparia B, Pirinen M, Saarela J, Samwald
M, Stoven V, Tang H, Tang J, Torkamani A, Vert JP, Wang B, Wang T,
Wennerberg K, Wineinger NE, Xiao G, Xie Y, Yeung R, Zhan X, Zhao C;
Members of the Rheumatoid Arthritis Challenge Consortium; Greenberg J,
Kremer J, Michaud K, Barton A, Coenen M, Mariette X, Miceli C, Shadick
N, Weinblatt M, de Vries N, Tak PP, Gerlag D, Huizinga TWJ, Kurreeman F,
Allaart CF, Louis Bridges S Jr, Criswell L, Moreland L, Klareskog L,
Saevarsdottir S, Padyukov L, Gregersen PK, Friend S, Plenge R,
Stolovitzky G, Oliva B, Guan Y, Mangravite LM.
Crowdsourced
assessment of common genetic contribution to predicting anti-TNF
treatment response in rheumatoid arthritis.
Nat Commun. 2016 Aug
23;7:12460. DOI:10.1038/ncomms12460, PMID:27549343, PMCID:PMC4996969.
Tikkanen E, Pirinen M, Sarin AP, Havulinna AS, Männistö S,
Saltevo J, Lokki ML, Sinisalo J, Lundqvist A, Jula A, Salomaa V, Ripatti
S.
Genetic support for the causal role of insulin in coronary heart
disease.
Diabetologia. 2016 Nov;59(11):2369-2377. DOI:10.1007/s00125-016-4081-6, PMID:27561896, PMCID: none.
Sieberts SK, Zhu F, García-García J, Stahl E, Pratap A, Pandey G,
Pappas D, Aguilar D, Anton B, Bonet J, Eksi R, Fornés O, Guney E, Li H,
Marín MA, Panwar B, Planas-Iglesias J, Poglayen D, Cui J, Falcao AO,
Suver C, Hoff B, Balagurusamy VSK, Dillenberger D, Neto EC, Norman T,
Aittokallio T, Ammad-Ud-Din M, Azencott CA, Bellón V, Boeva V, Bunte K,
Chheda H, Cheng L, Corander J, Dumontier M, Goldenberg A, Gopalacharyulu
P, Hajiloo M, Hidru D, Jaiswal A, Kaski S, Khalfaoui B, Khan SA, Kramer
ER, Marttinen P, Mezlini AM, Molparia B, Pirinen M, Saarela J, Samwald
M, Stoven V, Tang H, Tang J, Torkamani A, Vert JP, Wang B, Wang T,
Wennerberg K, Wineinger NE, Xiao G, Xie Y, Yeung R, Zhan X, Zhao C;
Members of the Rheumatoid Arthritis Challenge Consortium; Greenberg J,
Kremer J, Michaud K, Barton A, Coenen M, Mariette X, Miceli C, Shadick
N, Weinblatt M, de Vries N, Tak PP, Gerlag D, Huizinga TWJ, Kurreeman F,
Allaart CF, Bridges SL Jr, Criswell L, Moreland L, Klareskog L,
Saevarsdottir S, Padyukov L, Gregersen PK, Friend S, Plenge R,
Stolovitzky G, Oliva B, Guan Y, Mangravite LM.
Erratum: Crowdsourced
assessment of common genetic contribution to predicting anti-TNF
treatment response in rheumatoid arthritis.
Nat Commun. 2016 Oct
10;7:13205. DOI:10.1038/ncomms13205, PMID:27721464, PMCID:PMC5062501.
Gillberg J, Marttinen P, Pirinen M, Kangas AJ, Soininen P, Ali M,
Havulinna AS, Järvelin MR, Ala-Korpela M, Kaski S.
Multiple output
regression with latent noise.
Journal of Machine Learning Research.
2016 17: 4170-4204. DOI:none, PMID:
none, PMCID: none.
Leslie S, Winney B, Hellenthal G, Davison D, Boumertit A, Day T,
Hutnik K, Royrvik EC, Cunliffe B; Wellcome Trust Case Control Consortium
2; International Multiple Sclerosis Genetics Consortium; Lawson DJ,
Falush D, Freeman C, Pirinen M, Myers S, Robinson M, Donnelly P, Bodmer
W.
The fine-scale genetic structure of the British population.
Nature. 2015 Mar 19;519(7543):309-314. DOI:10.1038/nature14230, PMID:25788095, PMCID:PMC4632200.
Pirinen M, Lappalainen T, Zaitlen NA; GTEx Consortium;
Dermitzakis ET, Donnelly P, McCarthy MI, Rivas MA.
Assessing
allele-specific expression across multiple tissues from RNA-seq read
data.
Bioinformatics. 2015 Aug 1;31(15):2497-504. DOI:10.1093/bioinformatics/btv074, PMID:25819081,
PMCID:PMC4514921.
Baran Y, Subramaniam M, Biton A, Tukiainen T, Tsang EK, Rivas MA,
Pirinen M, Gutierrez-Arcelus M, Smith KS, Kukurba KR, Zhang R, Eng C,
Torgerson DG, Urbanek C; GTEx Consortium; Li JB, Rodriguez-Santana JR,
Burchard EG, Seibold MA, MacArthur DG, Montgomery SB, Zaitlen NA,
Lappalainen T.
The landscape of genomic imprinting across diverse
adult human tissues.
Genome Res. 2015 Jul;25(7):927-36. DOI:10.1101/gr.192278.115, PMID:25953952, PMCID:PMC4484390.
Rivas MA, Pirinen M, Conrad DF, Lek M, Tsang EK, Karczewski KJ,
Maller JB, Kukurba KR, DeLuca DS, Fromer M, Ferreira PG, Smith KS, Zhang
R, Zhao F, Banks E, Poplin R, Ruderfer DM, Purcell SM, Tukiainen T,
Minikel EV, Stenson PD, Cooper DN, Huang KH, Sullivan TJ, Nedzel J; GTEx
Consortium; Geuvadis Consortium; Bustamante CD, Li JB, Daly MJ, Guigo R,
Donnelly P, Ardlie K, Sammeth M, Dermitzakis ET, McCarthy MI, Montgomery
SB, Lappalainen T, MacArthur DG.
Human genomics. Effect of predicted
protein-truncating genetic variants on the human transcriptome.
Science. 2015 May 8;348(6235):666-9. DOI:10.1126/science.1261877, PMID:25954003, PMCID:PMC4537935.
Surakka I, Horikoshi M, Mägi R, Sarin AP, Mahajan A, Lagou V,
Marullo L, Ferreira T, Miraglio B, Timonen S, Kettunen J, Pirinen M,
Karjalainen J, Thorleifsson G, Hägg S, Hottenga JJ, Isaacs A, Ladenvall
C, Beekman M, Esko T, Ried JS, Nelson CP, Willenborg C, Gustafsson S,
Westra HJ, Blades M, de Craen AJ, de Geus EJ, Deelen J, Grallert H,
Hamsten A, Havulinna AS, Hengstenberg C, Houwing-Duistermaat JJ,
Hyppönen E, Karssen LC, Lehtimäki T, Lyssenko V, Magnusson PK, Mihailov
E, Müller-Nurasyid M, Mpindi JP, Pedersen NL, Penninx BW, Perola M, Pers
TH, Peters A, Rung J, Smit JH, Steinthorsdottir V, Tobin MD, Tsernikova
N, van Leeuwen EM, Viikari JS, Willems SM, Willemsen G, Schunkert H,
Erdmann J, Samani NJ, Kaprio J, Lind L, Gieger C, Metspalu A, Slagboom
PE, Groop L, van Duijn CM, Eriksson JG, Jula A, Salomaa V, Boomsma DI,
Power C, Raitakari OT, Ingelsson E, Järvelin MR, Thorsteinsdottir U,
Franke L, Ikonen E, Kallioniemi O, Pietiäinen V, Lindgren CM, Stefansson
K, Palotie A, McCarthy MI, Morris AP, Prokopenko I, Ripatti S; ENGAGE
Consortium.
The impact of low-frequency and rare variants on lipid
levels.
Nat Genet. 2015 Jun;47(6):589-97. DOI:10.1038/ng.3300, PMID:25961943,
PMCID:PMC4757735.
Salo PP, Vaara S, Kettunen J, Pirinen M, Sarin AP, Huikuri H,
Karhunen PJ, Eskola M, Nikus K, Lokki ML, Ripatti S, Havulinna AS,
Salomaa V, Palotie A, Nieminen MS, Sinisalo J, Perola M.
Genetic
Variants on Chromosome 1p13.3 Are Associated with Non-ST Elevation
Myocardial Infarction and the Expression of DRAM2 in the Finnish
Population.
PLoS One. 2015 Oct 28;10(10):e0140576. DOI:10.1371/journal.pone.0140576, PMID:26509668,
PMCID:PMC4625034.
Psychosis Endophenotypes International Consortium; Wellcome Trust
Case-Control Consortium 2; Bramon E, Pirinen M, Strange A, Lin K,
Freeman C, Bellenguez C, Su Z, Band G, Pearson R, Vukcevic D, Langford
C, Deloukas P, Hunt S, Gray E, Dronov S, Potter SC, Tashakkori-Ghanbaria
A, Edkins S, Bumpstead SJ, Arranz MJ, Bakker S, Bender S, Bruggeman R,
Cahn W, Chandler D, Collier DA, Crespo-Facorro B, Dazzan P, de Haan L,
Di Forti M, Dragović M, Giegling I, Hall J, Iyegbe C, Jablensky A, Kahn
RS, Kalaydjieva L, Kravariti E, Lawrie S, Linszen DH, Mata I, McDonald
C, McIntosh A, Myin-Germeys I, Ophoff RA, Pariante CM, Paunio T,
Picchioni M; Psychiatric Genomics Consortium; Ripke S, Rujescu D, Sauer
H, Shaikh M, Sussmann J, Suvisaari J, Tosato S, Toulopoulou T, Van Os J,
Walshe M, Weisbrod M, Whalley H, Wiersma D, Blackwell JM, Brown MA,
Casas JP, Corvin A, Duncanson A, Jankowski JA, Markus HS, Mathew CG,
Palmer CN, Plomin R, Rautanen A, Sawcer SJ, Trembath RC, Wood NW,
Barroso I, Peltonen L, Lewis CM, Murray RM, Donnelly P, Powell J,
Spencer CC.
A genome-wide association analysis of a broad psychosis
phenotype identifies three loci for further investigation.
Biol
Psychiatry. 2014 Mar 1;75(5):386-97. DOI:10.1016/j.biopsych.2013.03.033, PMID:23871474,
PMCID:PMC3923972.
Morris DW, Pearson RD, Cormican P, Kenny EM, O’Dushlaine CT,
Perreault LP, Giannoulatou E, Tropea D, Maher BS, Wormley B, Kelleher E,
Fahey C, Molinos I, Bellini S, Pirinen M, Strange A, Freeman C,
Thiselton DL, Elves RL, Regan R, Ennis S, Dinan TG, McDonald C, Murphy
KC, O’Callaghan E, Waddington JL, Walsh D, O’Donovan M, Grozeva D,
Craddock N, Stone J, Scolnick E, Purcell S, Sklar P, Coe B, Eichler EE,
Ophoff R, Buizer J, Szatkiewicz J, Hultman C, Sullivan P, Gurling H,
Mcquillin A, St Clair D, Rees E, Kirov G, Walters J, Blackwood D,
Johnstone M, Donohoe G; International Schizophrenia Consortium, SGENE+
Consortium; O’Neill FA; Wellcome Trust Case Control Consortium 2;
Kendler KS, Gill M, Riley BP, Spencer CC, Corvin A.
An inherited
duplication at the gene p21 Protein-Activated Kinase 7 (PAK7) is a risk
factor for psychosis.
Hum Mol Genet. 2014 Jun 15;23(12):3316-26. DOI:10.1093/hmg/ddu025, PMID:24474471,
PMCID:PMC4030770.
Tukiainen T, Pirinen M, Sarin AP, Ladenvall C, Kettunen J,
Lehtimäki T, Lokki ML, Perola M, Sinisalo J, Vlachopoulou E, Eriksson
JG, Groop L, Jula A, Järvelin MR, Raitakari OT, Salomaa V, Ripatti
S.
Chromosome X-wide association study identifies Loci for fasting
insulin and height and evidence for incomplete dosage compensation.
PLoS Genet. 2014 Feb 6;10(2):e1004127. DOI:10.1371/journal.pgen.1004127, PMID:24516404,
PMCID:PMC3916240.
Marttinen P, Pirinen M, Sarin AP, Gillberg J, Kettunen J, Surakka
I, Kangas AJ, Soininen P, O’Reilly P, Kaakinen M, Kähönen M, Lehtimäki
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Bioinformatics.
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Harlaar N, Docherty SJ, Hanscombe KB, Trzaskowski M, Curtis CJ, Strange
A, Freeman C, Bellenguez C, Su Z, Pearson R, Vukcevic D, Langford C,
Deloukas P, Hunt S, Gray E, Dronov S, Potter SC, Tashakkori-Ghanbaria A,
Edkins S, Bumpstead SJ, Blackwell JM, Bramon E, Brown MA, Casas JP,
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Nat Commun. 2014
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LeishGEN Consortium; Wellcome Trust Case Control Consortium 2;
Fakiola M, Strange A, Cordell HJ, Miller EN, Pirinen M, Su Z, Mishra A,
Mehrotra S, Monteiro GR, Band G, Bellenguez C, Dronov S, Edkins S,
Freeman C, Giannoulatou E, Gray E, Hunt SE, Lacerda HG, Langford C,
Pearson R, Pontes NN, Rai M, Singh SP, Smith L, Sousa O, Vukcevic D,
Bramon E, Brown MA, Casas JP, Corvin A, Duncanson A, Jankowski J, Markus
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Nat Genet.
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Sisay-Joof F, Bojang K, Pinder M, Sirugo G, Conway DJ, Nyirongo V,
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PLoS Genet. 2013 May;9(5):e1003509. DOI:10.1371/journal.pgen.1003509, PMID:23717212,
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Rivas MA, Pirinen M, Neville MJ, Gaulton KJ, Moutsianas L; GoT2D
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Assessing
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Bioinformatics. 2013 Oct 1;29(19):2419-26. DOI:10.1093/bioinformatics/btt409, PMID:23860716,
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Nat Genet. 2013
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Nature. 2013 Sep 26;501(7468):506-11. DOI:10.1038/nature12531,
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International Multiple Sclerosis Genetics Consortium (IMSGC);
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A, Band G, Baranzini SE, Barizzone N, Barrett J, Bellenguez C,
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Pirinen M, Donnelly P, and Spencer C.
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Ann. Appl. Stat. 7(1): 369-390 (March 2013). DOI:10.1214/12-AOAS586,
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International Stroke Genetics Consortium (ISGC); Wellcome Trust
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A, Spencer CC, Burgess AI, Pirinen M, Jackson CA, Traylor M, Strange A,
Su Z, Band G, Syme PD, Malik R, Pera J, Norrving B, Lemmens R, Freeman
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Nat Genet. 2012 Jul 22;44(8):848-51. DOI:10.1038/ng.2346, PMID:22820511, PMCID: none.
Su Z, Gay LJ, Strange A, Palles C, Band G, Whiteman DC, Lescai F,
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Peppelenbosch MP, van der Laan LJ, Kuipers EJ, Drenth JP, Peters WH,
Reynolds JV, Kelleher DP, McManus R, Grabsch H, Prenen H, Bisschops R,
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Wellcome Trust Case Control Consortium; Maller JB, McVean G,
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UK Parkinson’s Disease Consortium; Wellcome Trust Case Control
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IEEE/ACM Trans Comput Biol Bioinform. 2011
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Smith M, Bruges-Armas J, Couto AR, Sorrentino R, Paladini F, Ferreira
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International Multiple Sclerosis Genetics Consortium; Wellcome
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Nature. 2011 Aug 10;476(7359):214-9. DOI:10.1038/nature10251,
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Genetic Analysis of Psoriasis Consortium & the Wellcome Trust
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IEEE/ACM Trans Comput Biol
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