Anna Kuparinen

Index

Contact information:

Department of Biological and Environmental Science
Survontie 9 C
P.O. Box 35
FIN-40014 University of Jyväskylä

e-mail: anna.k.kuparinen(a)jyu.fi; anna.kuparinen(a)helsinki.fi
Phone:

Publications

Peer-reviewed scientific articles

  1. Perälä T, Kuparinen A. Detection of Allee effects in marine fishes: analytical biases generated by data availability and model selection. Proceedings of the Royal Society B series (in press)

  2. Noreikiene K, Kuparinen A, Merilä M. Age at maturation has sex and temperature specific effects on fish telomere length. Oecologia (in press)

  3. Klefoth T, Rebensburg P, Skov C, Kuparinen A, Arlinghaus R. Towards a mechanistic understanding of vulnerability to hook-and-line fishing – the role of behavior exemplified by experimentally angled common carp (Cyprinus carpio). Evolutionary Applications (in press)

  4. Hutchings JA, Kuparinen A (2017) Empirical links between natural mortality and recovery in marine fishes. Proceedings of the Royal Society B series 284: 20170693

  5. Perälä T, Swain D, Kuparinen A (2017) Examining non-stationarity in the recruitment dynamics of fishes using Bayesian change point analysis. Canadian Journal of Fisheries and Aquatic Sciences 74:751-765

  6. Kuparinen A, Hutchings J (2017) Genetic architecture of age at maturity can generate divergent and disruptive harvest-induced evolution. Philosophical Transactions of the Royal Society B series 372: 20160035

  7. Kuparinen A, Festa-Biachet M (2017) Harvest-induced evolution: insights from aquatic and terrestrial systems. Philosophical Transactions of the Royal Society B series 372: 20160036

  8. Theuerkauf M, Couwenberg J, Kuparinen A, Liebscher V (2016) A matter of dispersal - REVEALSinR introduces state-of-the-art dispersal models to quantitative vegetation reconstruction. Vegetation History and Archaeobotany 25:541

  9. Audzijonyte A, Fulton B, Haddon M, Helidoniotis F, Hobday AJ, Kuparinen A, Morrongiello J, Smith AD, Upston J, Waples R (2016) Trends and management implications of human-influenced life-history changes in marine ectotherms. Fish and Fisheries 17: 1005-1028

  10. Uusi-Heikkilä S, Lindström K, Parre N, Arlinghaus R, Alos J, Kuparinen A (2016) Altered trait variability in response to size-selective mortality. Biology Letters 12:20160584

  11. Lawrence E, Kuparinen A, Hutchings JA (2016) Effects of dams on population persistence of Atlantic salmon (Salmo salar). Canadian Journal of Zoology 94:329-338

  12. Kuparinen A, Hutchings JA, Waples R (2016) Harvest-induced evolution and effective population size. Evolutionary Applications 9:658–672

  13. Audzijonyte A, Kuparinen A (2016) The role of life histories and trophic interactions in population recovery. Conservation Biology 30:734-743

  14. Kuparinen A, Boit A, Valdovinos F, Lassaux H, Martinez N (2016) Fishing-induced life-history changes degrade and destabilize harvested ecosystems Scientific Reports 6:22245

  15. Roney NE, Hutchings JA, Olsen EM, Knutsen H, Albretsen J, Kuparinen A (2016) Fine-scale life-history structure in a highly mobile marine fish. Evolutionary Ecology Research 17:96-109

  16. Chrysafi A, Kuparinen A (2016) Assessing abundance of populations with limited data: Lessons learned from data-poor fisheries stock assessment. Environmental Reviews 24:25-38

  17. Perälä T, Kuparinen A (2015) Detecting Regime Shifts in Fish Stock Dynamics Canadian Journal of Fisheries and Aquatic Sciences 72:1619-1628

  18. Kuparinen A, Roney NE, Oomen RA, Hutchings JA, Olsen EM (2015) Small-scale life-history variability suggests potential for spatial mismatches in Atlantic cod management units. ICES Journal of Marine Sciences 73:286-292

  19. Mäntyniemi S, Whitlock R, Vanhatalo J, Rincón M, Gårdmark A, Kuparinen A, Pulkkinen H, Perälä T, Kuikka S (2015) General state-space population dynamics model for Bayesian stock assessment. ICES Journal of Marine Sciences 72:2209-2222

  20. Roney NE, Kuparinen A, Hutchings JA (2015) Comparative analysis of abundance-occupancy relationships for species-at-risk at both broad taxonomic and spatial scales. Canadian Journal of Zoology 93:515-519

  21. Uusi-Heikkilä S, Whiteley AR, Kuparinen A, Matsumura S, Venturelli PA, Wolter C, Slate J, Primmer CR, Meinelt T, Killen SS, Bierbach D, Polverino G, Ludwig A, R. Arlinghaus R (2015) The evolutionary legacy of size-selective harvest extends from genes to populations. Evolutionary Applications 8:597-620

  22. Theuerkauf M, Kienel U, Kuparinen A, Bauer A (2015) Effects of land use changes on pollen productivity of open vegetation during the last century. Holocene 25:733-744

  23. Audzijonyte A, Fulton E, Kuparinen A (2015) The impacts of fish body size changes on stock recovery: a case study using an Australian marine ecosystem model. ICES Journal of Marine Sciences 72:782-792/li>
  24. Paasche Ø, Österblom H, Neuenfeldt S, Bonsdorff E, Brander K, Conley D, Durant J, Eikeset AM, Goksøyr A, Jónsson S, Kjesbu OS, Kuparinen A, Stenseth NC (2015) Connecting the Seas of Norden. Nature Climate Change 5:89-92

  25. Kuparinen A, Stenseth NC, Hutchings JA (2014) Fundamental population-productivity relationships can be modified through density-dependent feedbacks of life-history evolution. Evolutionary Applications 7:1218-1225

  26. Jusufovski D, Kuparinen A (2014) Contrasting evolutionary and ecological management objectives in the context of sustainable harvesting. Evolutionary Ecology Research 16:133-142

  27. Kuparinen A, Hutchings JA (2014) Increased natural mortality at low abundance can generate an Allee effect in a marine fish. Royal Society Open Science 1:140075

  28. Theuerkauf M, Bos J, Jahns S, Janke W, Kuparinen A, Stebich M, Joosten H (2014) Corylus expansion and persistent openness in the early Holocene vegetation of northern central Europe. Quaternary Science Reviews 90:183-198

  29. Hutchings JA, Kuparinen A (2014) A generic target for species recovery. Canadian Journal of Zoology 92:371-376

  30. Hutchings JA, Kuparinen A (2014) Ghosts of fisheries-induced depletions: do they haunt us still? ICES Journal of Marine Sciences 71:1467-1473

  31. Kuparinen A, Keith DM, Hutchings JA (2014) Increased environmentally driven recruitment variability decreases resilience to fishing and increases uncertainty of recovery. ICES Journal of Marine Sciences 71:1507-1514

  32. Penteriani V, Delgado MM, Kuparinen A, Saurola P, Valkama J, Toivola J, Salo E, Arlettaz R, Aebischer A (2014) Bright moonlight triggers natal dispersal departures. Behavioural Ecology and Sociobiology 68:743-747

  33. Kuparinen A, Keith DM, Hutchings JA (2014) Allee effect and the uncertainty of population recovery. Conservation Biology 3:790-798

  34. Kuparinen A, Vinni M, Teacher AGF, Kähkönen K, Merilä J (2014) Mechanism of hybridization between bream Abramis brama and roach Rutilus rutilus in their native species range. Journal of Fish Biology 84:237-242

  35. Audzijonyte A, Kuparinen A, Fulton EA (2014) Ecosystem effects of contemporary life-history changes are comparable to those of fishing. Marine Ecological Progress Series 495:219-231

  36. Penteriani V, Kuparinen A, Delgado MM, Palomares F, López-Bao JV, Fedriani JM, Calzada, J, Moreno S, Villafuerte R, Campioni L, Lourenço R (2013) Responses of a top and a meso predator and their prey to moon phases Oecologia 173:753-766

  37. Ab Ghani NI, Kuparinen A, Leinonen T, Merilä J (2013) Population and sex-specific divergence in growth patterns between two nine-spined stickleback (Pungitius pungitius L) populations. Evolutionary Ecology Research 15:793-808

  38. Kotakorpi M, Tiainen J, Olin M, Lehtonen H, Nyberg K, Ruuhijärvi J, Kuparinen A (2013) Intensive fishing can mediate stronger side-dependent maternal effect in pike (Esox lucius). Hybrobiologia 718:109-118

  39. Pukk L, Kuparinen A, Järv L, Gross R, Vasemägi A (2013) Genetic and life-history changes associated with fisheries-induced population collapse. Evolutionary Applications 6:749-760

  40. Audzijonyte A, Kuparinen A, Gorton B, Fulton EA (2013) Ecological consequences of body size decline in harvested fish species: positive feedback loops in trophic interactions amplify human impact. Biology Letters 9:20121103

  41. Audzijonyte A, Kuparinen A, Fulton EA (2013) How fast is fisheries-induced evolution? Quantitative analysis of modelling and empirical studies. Evolutionary Applications 6:585-595

  42. Aikio S, Herczeg G, Kuparinen A, Merilä J (2013) Optimal growth at different predation pressures in the nine-spined stickleback. Journal of Fish Biology 82:318-331

  43. Theuerkauf M, Kuparinen A, Joosten H (2013) Pollen productivity estimates strongly depend on assumed pollen dispersal. Holocene 23:12-22

  44. McCairns SRJ, Kuparinen A, Panda B, Jokikokko E, Merilä J (2012) Effective size and genetic composition of two exploited migratory whitefish (Coregonus lavaretus) populations. Conservation Genetics 13:1509-1520

  45. Olin M, Jutila J, Lehtonen H, Vinni M, Ruuhijarvi J, Estlander S, Rask M, Kuparinen A, Lappalainen J (2012) Importance of maternal size on the reproductive success of perch (Perca fluviatilis L.) in small forest lakes -implications for fisheries management. Fisheries Management and Ecology 19:363-374

  46. Kuparinen A, Mäntyniemi S, Hutchings JA, Kuikka S (2012) Increasing biological realism of fisheries stock assessment: towards hierarchical Bayesian methods. Environmental Reviews 20:135-151

  47. Hutchings JA, Myers RA, Garcia VB, Lucifora LO, Kuparinen A (2012) Life-history correlates of extinction risk and recovery potential. Ecological Applications 22:1061-1067

  48. Kuparinen A, Alho J, Olin M, Lehtonen H (2012) Estimation of northern pike population sizes via mark-recapture monitoring. Fisheries Management and Ecology 19:323-332

  49. Kremer A, Ronce O, Robledo-Arnuncio JJ, Guillaume F, Bohrer G, Nathan R, Bridle JR, Gomulkiewicz R, Klein EK, Ritland K, Kuparinen A, Gerber S, Schueler S (2012) Long distance gene flow and adaption of forest trees to rapid climate change. Ecology Letters 15:378-391

  50. Kuparinen A, Hutchings JA (2012) Consequences of fisheries-induced evolution for population productivity and recovery potential. Proceedings of the Royal Society B 279:2571-2579 [listed in Faculty of 1000]

  51. Kuparinen A, Hardie DC, Hutchings JA (2012) Evolutionary and ecological feedbacks of the survival cost of reproduction. Evolutionary Applications 5:245-255

  52. Uusi-Heikkilä S, Kuparinen A, Wolter C Meinelt T Arlinghaus R (2012) Paternal body size affects reproductive success in zebrafish (Danio rerio). Environmental Biology of Fishes 93:461-474

  53. Muukkonen P, Angervuori A, Virtanen T, Kuparinen A, Merilä J (2012) Loss and fragmentation of Siberian jay (Perisoreus infaustus) habitats. Boreal Environmental Research 17:59-71

  54. Herczeg G, Gonda A, Kuparinen A, Merilä J (2012) Contrasting growth strategies of pond vs. marine populations of nine-spined stickleback (Pungitius pungitius): a combined effect of predation and competition? Evolutionary Ecology 26:109-122

  55. Shimada Y, Shikano T, Kuparinen A, Gonda A, Leinonen T, Merilä J (2011) Quantitative genetics of body size and timing of maturation in two nine-spined stickleback (Pungitius pungitius) populations. PLoS ONE 6(12): e28859

  56. Penteriani V, Kuparinen A, del Mar Delgado M, Lourenço R, Campioni L (2011) Individual status, foraging effort and need for conspicuousness shape behavioural responses of a predator to moon phases. Animal Behaviour 82:413-420

  57. Kuparinen A, Cano Arias JM, Loehr J, Herczeg G, Gonda A, Merilä J (2011) Fish age at maturation is influenced by temperature independently of growth. Oecologia 167:435-443

  58. Kuparinen A, Björklund M (2011) Theory put into practise: an R implementation of the infinite-dimensional model. Ecological Modelling 222:2027-2030

  59. Nathan R, Katul GG, Bohrer G, Kuparinen A, Soons MB, Thompson SE, Trakhtenbrot A, Horn HS (2011) Mechanistic models of seed dispersal by wind. Theoretical Ecology 4:113-132

  60. Nathan R, Horvitz Nir, He Y, Kuparinen A, Schurr FM, Katul GG (2011) Spread of North American wind-dispersed trees in future environments. Ecology Letters 14:211-219 [classified as "Must Read" by Faculty of 1000]

  61. Uusi-Heikkilä S, Kuparinen A, Wolter C, Meinelt T, O'Toole AC, Arlinghaus R (2011) Experimental assessment of the probabilistic maturation reaction norm: condition matters. Proceedings of the Royal Society B 278:709-717

  62. Kuparinen A, Laugen AT, Laurila A, Merilä J (2010) Developmental threshold model challenged by temperature. Evolutionary Ecology Research 12:821-829

  63. Kuparinen A, Klefoth T, Arlinghaus R. (2010) Abiotic and fishing-related correlates of angling catch rates in pike (Esox lucius). Fisheries Research 105:111-117

  64. Kuparinen A, Tufto J, Consuegra S, Hindar K, Merilä J, Garcia de Leaniz C (2010) Effective size of an Atlantic salmon (Salmo salar L.) metapopulation in Northern Spain. Conservation Genetics 11:1559-1565

  65. Kuparinen A, Savolainen O, Schurr FM (2010) Increased mortality can promote evolutionary adaptation of forest trees to climate change. Forest Ecology and Management 259:1003-1008

  66. Kuparinen A, Merilä J (2009) Variation in timing of river entry of Atlantic salmon (Salmo salar L.) in the Baltic. Current Zoology 55:342-349

  67. Kuparinen A, O'Hara RB, Merilä J (2009) Lunar periodicity and the timing of river entry in Atlantic salmon Salmo salar L. Journal of Fish Biology 74:2401-2408

  68. Kuparinen A, Katul G, Nathan R, Schurr FM (2009) Increases in air temperature can promote wind-driven dispersal and spread of plants. Proceedings of the Royal Society B 276:3081-3087

  69. Kuparinen A, Kuikka S, Merilä J (2009) Estimating fisheries-induced selection: traditional gear selectivity research meets fisheries-induced evolution. Evolutionary Applications 2:234-243

  70. Kuparinen A, Garcia de Leaniz C Consuegra S, Merilä J (2009) Growth history perspective on decreasing age and size at maturation of exploited Atlantic salmon. Marine Ecology Progress Series 376:245-252

  71. Kuparinen A, O'Hara RB, Merilä J (2008) Probabilistic reaction norms for continuous ontogenetic transition processes. PLoS ONE 3:e3677

  72. Cano JM, Shikano T, Kuparinen A, Merilä J (2008) Genetic differentiation, effective population size and gene flow in marine fishes: implications for stock management. Journal of Integrative Field Biology 5:1-10

  73. Kuparinen A, O'Hara RB, Merilä J (2008) The role of growth history in determining the age and size at maturation. Fish and Fisheries 9:201-207

  74. Kuparinen A, Merilä J (2008) The role of fisheries-induced evolution. Science 320:47-48

  75. Kuparinen A, Schurr FM (2008) Assessing the risk of gene flow from genetically modified trees carrying mitigation transgenes. Biological Invasions 10:281-290

  76. Kuparinen A, Merilä J (2007) Detecting and managing fisheries-induced evolution. Trends in Ecology and Evolution 22:652-659

  77. Kuparinen A, Markkanen T, Riikonen H, Vesala T (2007) Modeling air-mediated dispersal of spores, pollen and seeds in forested areas. Ecological Modelling 208:177-188

  78. Kuparinen A, Schurr F, Tackenberg O, O'Hara RB (2007) Air-mediated pollen flow from genetically modified to conventional crops. Ecological Applications 17:431-440

  79. Kuparinen A, Snäll T, Vänskä S, O'Hara RB (2007) The role of model selection in describing stochastic ecological processes. Oikos 116:966-974

  80. Kuparinen A, Schurr FM (2007) A flexible modeling framework linking the spatio-temporal dynamics of plant genotypes and populations: application to gene flow from transgenic forests. Ecological Modelling 202:476-486

  81. Kuparinen A (2006) Mechanistic models for wind dispersal. Trends in Plant Science 11:296-301

Popular scientific articles

  • Kuparinen A (2015) When does ecology of fishes became fisheries research? Animal Ecology in Focus 21.11.2015
  • Kuparinen A, Uusi-Heikkilä S, Vainikka A (2015) Isoja emokaloja tarvitaan. Suomen Kalastuslehti 122(6):20-22
  • Kuparinen A (2015) Ylämitta suojelee kalakannan perimää. Helsingin Sanomat Mielipide 21.2.2015
  • Kuparinen A, Audzijonyte A, Fulton E (2013) Small fry. Australasian Science 34:16-18
  • Kuparinen A, Mäntyniemi S, Hutchings J, Kuikka S (2012) Biologiasta apua kalakantojen arviointiin ja kalastuksen säätelyyn. Luonnon Tutkija 116(4):114-120
  • Kuparinen A (2012) Kalakantojen elpyminen vie aikaa. Suomen Kalastuslehti 119(7):28-30
  • Kuparinen A, Merilä J (2009) Sata vuotta tutkimuksia lohien vaelluksesta Pohjanlahden jokiin. Luonnon Tutkija 3: 108-109 [In Finnish: 100 year of studies on salmon migration to the rivers in the Gulf of Bothnia]
  • Kuparinen A, Merilä J (2008) Ilmastonmuutoksen kalansaalis. Helsingin Sanomat Tiede & Luonto 29.5.2008 [In Finnish: Environmental effects on fish growth]
  • Merilä J, Kuparinen A (2008) Laitostuvat lohikalat. Suomen Kalastuslehti 3/2008 [In Finnish: Salmon hatcheries hatching problems]
  • Kuparinen A, Merilä J (2007) Laitoskasvatus haitallista kalanpoikasille. Helsingin Sanomat 11.10.2007 [In Finnish: Hatchery practices threatening wild salmon stocks?]
  • Kuparinen A, Merilä J, Marttinen M, Koivurinta M (2007) Vesivoimasta kalakatastrofi. Suomen Kuvalehti 13.7.2007 [In Finnish: Climate change and government threatening salmonids]
  • Kuparinen A, Merilä J (2007) Vesivoiman rakentaminen uhka luonnonlohikannalle. Helsingin Sanomat 7.5.2007 [In Finnish: More hydroelectric power to Finland? No - is our informed opinion]

Academic theses:

  • Kuparinen A (2006) Gene flow from transgenic plant populations: models and applications for risk assessment. PhD thesis.
  • Kuparinen A (2004) Vararikkoteorian tuloksia alieksponentiaalisilla jakaumilla. (In Finnish: Results of ruin theory in the presence of subexponential distributions). Master's thesis.

Book review

  • Kuparinen A (2010) Ecosystem-based fisheries management. Confronting tradeoffs. Luonnon Tutkija 5:182
  • Kuparinen A (2009) Adaptive Governance: The Dynamics of Atlantic Fisheries Management. The Quarterly Review of Biology 84:293-294